View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1758_low_4 (Length: 584)
Name: NF1758_low_4
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 109 - 493
Target Start/End: Complemental strand, 10085412 - 10085016
Alignment:
| Q |
109 |
cttgagattaggttcagctcttttctcaccccatgttcggacgacaacattgttcgcctaaaacataaat--tatcccatgaattt--caatacagacaa |
204 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||||| || |
|
|
| T |
10085412 |
cttgagattagattaagctcttttctcaccccatgttcggacggcaacattgtttgcctaaaacataaatattatcccatgaatttttcaatacaaactc |
10085313 |
T |
|
| Q |
205 |
aacattatcaaagaaaaaatcaatagaattgtaaataaagcaaacctcatcattgctaatgggaacagaatcatgaactag---------ggtttccaat |
295 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
10085312 |
tatattatctaagaaaaaatcaatagaattgtaaataaaacaaacgtcgtcattgctaatgggaacagaatcatgaacaaggtttccaatggtttccaac |
10085213 |
T |
|
| Q |
296 |
ttagaactcaagaggtttagggtttcttgagcctcaaccctctttctcaacgannnnnnncttaatctctttagatttagaaataaactcggatgcatct |
395 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10085212 |
ttagaattcaagaggtttacggtttcctgagcctcaa-cctctttaacagcgactttttttttaatctctttagatttagaaataaactcggcagcatct |
10085114 |
T |
|
| Q |
396 |
tcacctcctcgcttgagtttggaaacttccatgttgattttgttgaatcatttactaagattctcaaactcaaattgacgttttcgccattctatgtc |
493 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
10085113 |
tcaccacctcgcttgagtttggaaacttccgtgttgattttgttgaattctttacgaagattcttcaactcaaattgatgttttcgccattctttgtc |
10085016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 10085512 - 10085445
Alignment:
| Q |
22 |
tcagagcttcgttaagacgaacaccagctcctctgagatagtaacctctacttccagcaacatcagct |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10085512 |
tcagagcttcgttaagacgaacaccagctcctttgagacagtaacctctacctccagcaacatcagct |
10085445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 109 - 400
Target Start/End: Complemental strand, 36860179 - 36859881
Alignment:
| Q |
109 |
cttgagattaggttcagctcttttctcaccccatgttcggacgacaacattgttcgcctaaaacataaattatcccatgaatttcaatacagacaaaaca |
208 |
Q |
| |
|
|||||| || |||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||| ||| | | ||| |
|
|
| T |
36860179 |
cttgagcttcggttcatctcttttctcaccccatgttcggacgacaagattattagcctaaaacataaattatcctatgaatttcaa-acaaatactaca |
36860081 |
T |
|
| Q |
209 |
ttatcaaagaaaaaatcaatagaattgtaaataaagcaaacctcatcattgctaatgggaacagaatcatgaactag---------ggtttccaatttag |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
36860080 |
ttatcaaagaaaaaatcaatagaattgtaaataaaacaaacctcatcattgctgatgggaacagaatcatgaacgaggtttccaatggtttccaatttag |
36859981 |
T |
|
| Q |
300 |
aactcaagaggtttagggtttcttgagcctcaaccctctttctcaacgannnnnnncttaatctctttagatttagaaataaactcggatgcatcttcac |
399 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| ||||||| ||| | | ||||||||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
36859980 |
aattcaagaggtttagggtttcctgagcctcaa-cctctttttcagctatctttttcttaatctcttcagatttagcaataaactcggttgcatcttcac |
36859882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 36859802 - 36859731
Alignment:
| Q |
403 |
ctcgcttgagtttggaaacttccatgttgattttgttgaatcatttactaagattctcaaactcaaattgac |
474 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| | ||||| |||||||||||||| ||||||| |
|
|
| T |
36859802 |
ctcgcttgagtttggaaacttccttattgattttgttgacttctttacggagattctcaaactcgaattgac |
36859731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 36861049 - 36860981
Alignment:
| Q |
24 |
agagcttcgttaagacgaacaccagctcctctgagatagtaacctctacttccagcaacatcagctcct |
92 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| |||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
36861049 |
agagcttggttaagaaaaacaccatctcctttgagatagaaacctctacctccagcaacatcggctcct |
36860981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 504 - 571
Target Start/End: Complemental strand, 4764327 - 4764264
Alignment:
| Q |
504 |
tcagtagttggacttaagtttttgcttgcttaagtcccttgcaactgttttgccaggtgcaggttgat |
571 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4764327 |
tcagaagttggacttaagtttttgctt----aagtcccttgcaactgttttgccaggtgcaggttgat |
4764264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University