View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1758_low_6 (Length: 524)
Name: NF1758_low_6
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 36290236 - 36290729
Alignment:
| Q |
13 |
cacagacataacctagaccgatgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290236 |
cacagacataacctagaccgatgttaacatcatcagcggtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcct |
36290335 |
T |
|
| Q |
113 |
caaaccagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcagga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36290336 |
caaaccagttttatcaaccatttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcgagataatactttcttcagga |
36290435 |
T |
|
| Q |
213 |
gttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290436 |
gttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaa |
36290535 |
T |
|
| Q |
313 |
gatcaggaacaccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290536 |
gatcaggaacaccgttcttcttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatc |
36290635 |
T |
|
| Q |
413 |
agaaacatctttttcatcagtgaaaactgttttgctattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataatt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36290636 |
agaaacatctttttcatcagtgaaaactgttttgccattgaattctaacaagagttctggttttgaaagtggatgattctgaaggcgcataatt |
36290729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 439
Target Start/End: Original strand, 36312739 - 36313145
Alignment:
| Q |
33 |
atgttaacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaacca |
132 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
36312739 |
atgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttgttacaacagctaatgtcctcaaaccagttttatcaacca |
36312838 |
T |
|
| Q |
133 |
tttgtgacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttcaggagttatatactccataataat |
232 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||||| |
|
|
| T |
36312839 |
tctgtgacatcctaatagactcacaagtactaaaatcaacagtagcagaaagaacattcaggataatgctctcttcaggagttatatagtccatgataat |
36312938 |
T |
|
| Q |
233 |
atctttaatctgatcatagatattatcaggttgaccatgaacaggtacacgtgtgatacctggaagatcaaccatggtaagatcaggaacaccgttcttc |
332 |
Q |
| |
|
||| |||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||| || |||||| |
|
|
| T |
36312939 |
atccttaatctgatcataaatgttatcaggttgaccatgaacaggaacacgagttatacctggaagatcaaccattgtaaggtcaggaacgccattcttc |
36313038 |
T |
|
| Q |
333 |
ttgacaatcaatgtcaaaggagtgttggaaatccctttggcagaaccagcaatttcctcagtagctatgtttattgcatcagaaacatctttttcatcag |
432 |
Q |
| |
|
|| |||||||| |||| |||||||| |||||||||||||||| ||||||| || ||||||||| ||||||| |||||||| |||| | |||||||| |
|
|
| T |
36313039 |
ttcacaatcaaagtcagtggagtgtttgaaatccctttggcagttccagcaagctcttcagtagctgtgtttatagcatcagagacatttgcttcatcag |
36313138 |
T |
|
| Q |
433 |
tgaaaac |
439 |
Q |
| |
|
| ||||| |
|
|
| T |
36313139 |
ttaaaac |
36313145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 33579675 - 33579845
Alignment:
| Q |
38 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
137 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
33579675 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaaccagttttatcaacagtttct |
33579774 |
T |
|
| Q |
138 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
208 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
33579775 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
33579845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 33579866 - 33579949
Alignment:
| Q |
192 |
aagataatactttcttcaggagttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
275 |
Q |
| |
|
|||||||| |||||||| || |||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
33579866 |
aagataatgctttcttccataggtataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
33579949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 15997323 - 15997153
Alignment:
| Q |
38 |
aacatcatcagcagtaaccttctccaacaatccttcaggagatttatcggcttttgtgacaacagcaagtgtcctcaaaccagttttatcaaccatttgt |
137 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||||||| || |||| | ||||||||| ||||||| ||||||||||||| ||| | |
|
|
| T |
15997323 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttgaagtagcagcaagtgacctcaaatcagttttatcaacagtttct |
15997224 |
T |
|
| Q |
138 |
gacatcctaatagactcacaagttgtaaaatcaacagtagcagaaaggacattcaagataatactttcttc |
208 |
Q |
| |
|
|||||||| | ||||||||||| | ||||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
15997223 |
gacatccttaatgactcacaagtagagaaatcaatagtagcagaaagaacattcaagataatgctttcttc |
15997153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 15997118 - 15997057
Alignment:
| Q |
214 |
ttatatactccataataatatctttaatctgatcatagatattatcaggttgaccatgaaca |
275 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
15997118 |
ttataaactccataataatatcttcaatttgatcataactattatcatgttgaaaatgaaca |
15997057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 30575823 - 30575787
Alignment:
| Q |
38 |
aacatcatcagcagtaaccttctccaacaatccttca |
74 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
30575823 |
aacatcatcagcagtaactttctcaaacaatccttca |
30575787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University