View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_8 (Length: 486)
Name: NF1758_low_8
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Complemental strand, 48456097 - 48455622
Alignment:
| Q |
10 |
catcatcaactacacgtgtgaaaggcatatactggatagaaaacccacttttccctccagcttccatagatacatcacttttcactcacattttctacgc |
109 |
Q |
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| T |
48456097 |
catcatcaaccacacgtgtgaaaggcatatactggatagaaaacccacttttccctccatcttccatagatacatcacttttcactcacattttctacgc |
48455998 |
T |
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| Q |
110 |
ttttgtttcacccaacaaattcacttataagctagaagaagaagaaga---ttcaacaactgtagccacctccctcactactttcaccaacactttcaaa |
206 |
Q |
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| T |
48455997 |
ttttgtttcacccaacaaattcacttataagctagaagaagaagaagaagattcaacaactgtagccacctccctcactactttcaccaacactttcaaa |
48455898 |
T |
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| Q |
207 |
actaaaacccctcccattcctaccctcctttccattggaggtgcaactagcaattccacactctttgctttcatcgcctctgaccccacggcacgtgcta |
306 |
Q |
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| T |
48455897 |
actaaaacccctcccattcctaccctcctttccattggaggtgcaactagcaattccacactctttgctttcattgcctctgaccccacggcacgtgcta |
48455798 |
T |
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| Q |
307 |
cattcatcaactctacaatccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtttcctacaaccacaaaagaaatgaatgacct |
406 |
Q |
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| T |
48455797 |
ccttcatcaactctacaatccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtttcctacaaccacaaaagaaatgaatgacct |
48455698 |
T |
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| Q |
407 |
tggagaattgcttttccaatggcgaagagcaatttccgacgaagcagcctccaccagccggccacctatgattctc |
482 |
Q |
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| T |
48455697 |
tggagaattgcttttccaatggcgaagagcaatttccgacgaagcaacctccaccagccggccacctttgcttctc |
48455622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 472
Target Start/End: Complemental strand, 48461383 - 48461088
Alignment:
| Q |
177 |
tccctcactactttcaccaacactttcaaaactaaaacccctcccattcctaccctcctttccattggaggtgcaactagcaattccacactctttgctt |
276 |
Q |
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||||||| ||||||||||| || |||||||| ||| ||||||| |||| ||| ||||||||||||||||| ||||||||| | | || || | |
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| T |
48461383 |
tccctcaacactttcaccaaaaccttcaaaacaaaatcccctcctgcagctactctcttttccattggaggtgcaggtagcaattcatccttgttggcct |
48461284 |
T |
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| Q |
277 |
tcatcgcctctgaccccacggcacgtgctacattcatcaactctacaatccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtt |
376 |
Q |
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| T |
48461283 |
tcatcgcctccgatccacccgcatgtgccgccttcattaactctacaatcgacgttgctcgtacatttggattcgatggaattgacttggattgggagtt |
48461184 |
T |
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| Q |
377 |
tcctacaaccacaaaagaaatgaatgaccttggagaattgcttttccaatggcgaagagcaatttccgacgaagcagcctccaccagccggccacc |
472 |
Q |
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| T |
48461183 |
tcctaaaaacactaaagaaatgaacgacctcggagaaatgctcttccaatggcgaaaagctatctccgatgaaggcgccaccaccggccggccacc |
48461088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 48461541 - 48461444
Alignment:
| Q |
10 |
catcatcaactacacgtgtgaaaggcatatactggatagaaaacccacttttccctccagcttccatagatacatcacttttcactcacattttctac |
107 |
Q |
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||||||||| |||||||||||||| || |||||| ||||||| ||| ||||||||||| || | |||| |||||||| || |||||||| |||||| |
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| T |
48461541 |
catcatcaatcacacgtgtgaaaggtatttactggttagaaaatccatttttccctccaactacagtagacacatcactctttactcacatcttctac |
48461444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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