View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_9 (Length: 484)
Name: NF1758_low_9
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 185 - 468
Target Start/End: Original strand, 40282645 - 40282926
Alignment:
| Q |
185 |
gcaggtcggtgtttaaaagtcttacattggataagatacactgttaacgtacaaggtctttataagtggcggacagtcctcaccttataagtcggttttc |
284 |
Q |
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| T |
40282645 |
gcaggccggtgtttaaaagtcttacattggataagatacactgttaag--acaaggtctttataagtggcggacagtcctcaccttataagtcggttttc |
40282742 |
T |
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| Q |
285 |
tagaagttgagttagacccaatccaaattcgaagatggtactagagccaacccaaaatccatttcaaggtaaatgaataaaaataagtaagagcatcttt |
384 |
Q |
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| T |
40282743 |
taggagttgagttagaccaaatccaaattcgaagatggtactagagccaacccaaaatccatttcaaggtaaatgaataaaaataagtaagagcatcttt |
40282842 |
T |
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| Q |
385 |
aataaaattgtctcatttctgtgtactttgctgagctctgagagaatatgaacatttcatagcatcctggggtgggggatattg |
468 |
Q |
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| T |
40282843 |
aataaaattgtctcatttctgtgtactttgctgagctctgagagaatatgagcatttcatagcatcctggggtgggggatattg |
40282926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 40282521 - 40282565
Alignment:
| Q |
11 |
cagagagaaagaggtgggatgtgtttaaaatacaaaatattactg |
55 |
Q |
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| T |
40282521 |
cagagagaaagaggtgggatgtgtttaaaatacaaaatattactg |
40282565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 40282587 - 40282620
Alignment:
| Q |
127 |
atttaaatgtggtccacccaatgatccaaggctc |
160 |
Q |
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| T |
40282587 |
atttaaatgtggtccacccagtgatccaaggctc |
40282620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 43433771 - 43433693
Alignment:
| Q |
243 |
tttataagtggcggacagtcctcaccttataagtcggttttctagaagttgagttagacccaatccaaattcgaagatg |
321 |
Q |
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||||||||||| || ||||||||| ||| |||| |||||| ||| |||||||||| ||||| |||||||| |||||| |
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| T |
43433771 |
tttataagtggtgggtagtcctcactttagaagttggttttgtaggggttgagttaggcccaacccaaattctaagatg |
43433693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 252561 - 252602
Alignment:
| Q |
289 |
agttgagttagacccaatccaaattcgaagatggtactagag |
330 |
Q |
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| T |
252561 |
agttgagttaggcccaatccaaattctaagagggtactagag |
252602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 27724490 - 27724530
Alignment:
| Q |
243 |
tttataagtggcggacagtcctcaccttataagtcggtttt |
283 |
Q |
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| T |
27724490 |
tttataagtggtggacagtcctcgccttataaatcggtttt |
27724530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 40496987 - 40496947
Alignment:
| Q |
243 |
tttataagtggcggacagtcctcaccttataagtcggtttt |
283 |
Q |
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|||||||||||||| |||| ||| ||||||||||||||||| |
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| T |
40496987 |
tttataagtggcgggcagttctcgccttataagtcggtttt |
40496947 |
T |
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