View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17590_high_1 (Length: 604)
Name: NF17590_high_1
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17590_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 587
Target Start/End: Complemental strand, 15180153 - 15179572
Alignment:
| Q |
6 |
agtgagatgaaagactttaccaaatacaattgccacatccgttatggttagatcttccactaacatctatgacttgggtataactttaaaatttcacaaa |
105 |
Q |
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| T |
15180153 |
agtgacatgaaagactttaccaaatacaattgccacatccgatatggttagaccttccactaacatctatgacttgggtataacttcaaaatttcacaac |
15180054 |
T |
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| Q |
106 |
tcgtaaattacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcaga |
205 |
Q |
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| T |
15180053 |
tcgtaaattacacgtaaatagaagataaataaaataagtcaaaccttgaaattaaagcaagtatgaaggtaaaagcagggagaaggtcaagcatagcaga |
15179954 |
T |
|
| Q |
206 |
tgctagtgtgggagagctacattcaattccagtattcgttaaaatctgcactgcagtactgcacaggtaggtagctcaagatcaatcaaacaatcaaatt |
305 |
Q |
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| T |
15179953 |
tgctagtgtgggagagctacattcaattccagtattcgttaaaatctgcactgcagtactgcacaggtaggtagctcaagatcaatcaaacaatcaaatt |
15179854 |
T |
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| Q |
306 |
ttccacataaatttccttatctacaactaaattcatatccatacaataatattttctttgactcgtatcgagtcagaggatcagatgaaggagaaaatac |
405 |
Q |
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| T |
15179853 |
ttccacataaattcccttctctacaactaaattcatatccatacaataatattttctttgactcgtatcgagtcaaaggatcagatgaaggagaaaatac |
15179754 |
T |
|
| Q |
406 |
taatataacaaccgattactaacatttctccgtctaaaaaacatatactatgctatttaacttggtggttgatttgtacatacctgaggcaactaagaag |
505 |
Q |
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| T |
15179753 |
taatataacaaccgattactaacatttatctgtctaaaaaacatataccatgctatttaatttggtgatagatttgtacatacctgaggcaactaagaag |
15179654 |
T |
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| Q |
506 |
aaacattctacataaaattggtaatgaaattgaaggaggggctctttttctgtggtagaaaaaggtggatggtaaaaggaaa |
587 |
Q |
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| T |
15179653 |
aaacattctacataaaattgatgatgaaattgaaggaggggctctttttctgtggtagaaaaaggttaatggtaaaaggaaa |
15179572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 15189688 - 15189565
Alignment:
| Q |
147 |
aaccttgaaattaaagcaagtatgaaggtaaaagctgggagaaggtcaagcatagcagatgctagtgtgggagagctacattcaattccagtattcgtta |
246 |
Q |
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| T |
15189688 |
aaccttgaaattacagcaagtatgaacgtgaaagcagggacaaggtcaaccatagcagatgccaatgtgggagagctatatccaattccagtattcatta |
15189589 |
T |
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| Q |
247 |
aaatctgcactgcagtactgcaca |
270 |
Q |
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| T |
15189588 |
aaatctgcactgcagtactgcaca |
15189565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 15201648 - 15201610
Alignment:
| Q |
148 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
186 |
Q |
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| T |
15201648 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15201610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 15208595 - 15208557
Alignment:
| Q |
148 |
accttgaaattaaagcaagtatgaaggtaaaagctggga |
186 |
Q |
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| T |
15208595 |
accttgaaattatagcaagtatgaaggtaaaagcaggga |
15208557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 579
Target Start/End: Complemental strand, 15201326 - 15201233
Alignment:
| Q |
486 |
tacctgaggcaactaagaagaaacattctacataaaattggtaatgaaattgaaggaggggctctttttctgtggtagaaaaaggtggatggta |
579 |
Q |
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| T |
15201326 |
tacctgaggcaaccaaaaacaaatattctgcagaaaattgatgttgaaattggaggaggagctctttttctatggtggaagagagtggatggta |
15201233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 579
Target Start/End: Complemental strand, 15208394 - 15208305
Alignment:
| Q |
490 |
tgaggcaactaagaagaaacattctacataaaattggtaatgaaattgaaggaggggctctttttctgtggtagaaaaaggtggatggta |
579 |
Q |
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| T |
15208394 |
tgaggcaaccaagaagaagtaatctacagaaaattgatgttgaaattggaggaggagctctttttctatggtggaagagagtggatggta |
15208305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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