View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17590_high_3 (Length: 376)

Name: NF17590_high_3
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17590_high_3
NF17590_high_3
[»] scaffold0090 (1 HSPs)
scaffold0090 (16-353)||(10541-10879)


Alignment Details
Target: scaffold0090 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 10879 - 10541
Alignment:
Q  16 aaaatggatagtattttcaactttaactaaataaataaacaactatgtaatgactttctgtgttttctcagatgcaaagaaattgaaaattgcaacctt- 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10879 aaaatggatagtattttcaactttaactaaataaataaacaactatgtaatgactttctgtgttttctcagatgcaaagaaattgaaaattgcaaccttt 10780  T
Q  115 gtagaccagaatgctctattttgtaaatgctctatatataatttcttgtattaattatatccccttatcaacacaaaatggcaattcttcctaccattct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||    
T  10779 gtagaccagaatgctctattttgtaaatgctctatatataatttcttgtattaattatattccctaatcaacacaaaatggcaattcttcctaccatcct 10680  T
Q  215 tgtttttaccaagctactattattcttctccgaaatttcatttgcagccgatacaattacacaatcacttcctgatggaagcaccttggtttctaagggt 314  Q
    |||| |||| ||| | ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10679 tgttattactaagttgctattattcttctccaaattttcatttgcaaccgatacaattacacaatcacttcctgatggaagcaccttggtttctaagggt 10580  T
Q  315 ggagtatttgagttgggtttcttcaatccgggtagttcc 353  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  10579 ggagtatttgagttaggtttcttcaatccaggtagttcc 10541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University