View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17590_high_4 (Length: 363)
Name: NF17590_high_4
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17590_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 48593410 - 48593738
Alignment:
| Q |
18 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593410 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
48593509 |
T |
|
| Q |
118 |
atgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
217 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593510 |
atgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
48593609 |
T |
|
| Q |
218 |
ttgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaag |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593610 |
ttgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaag |
48593705 |
T |
|
| Q |
318 |
cccttgctctcctatttctctttacttcttctc |
350 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
48593706 |
cccttgctcttctatttctctttacttcttctc |
48593738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 48598021 - 48598349
Alignment:
| Q |
18 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598021 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
48598120 |
T |
|
| Q |
118 |
atgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
217 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598121 |
atgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
48598220 |
T |
|
| Q |
218 |
ttgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaag |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598221 |
ttgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaag |
48598316 |
T |
|
| Q |
318 |
cccttgctctcctatttctctttacttcttctc |
350 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
48598317 |
cccttgctcttctatttctctttacttcttctc |
48598349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 23223094 - 23222890
Alignment:
| Q |
18 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
117 |
Q |
| |
|
||||||||||||| || || |||||||||||| | || |||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| || || |
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| T |
23223094 |
gaaggagaggttgcccggggatgcctttggccatgcgcgaattgccgactgtgattggagctttagtacaatgctttgagtggaagatgcttgactctga |
23222995 |
T |
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| Q |
118 |
atgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
217 |
Q |
| |
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| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
23222994 |
aggtaaattattagatcaaggcaaaacaatcgatatggatgaacggcctggattgactgctcctagagccaatgatcttttttgcattccagttgcaaga |
23222895 |
T |
|
| Q |
218 |
ttgaa |
222 |
Q |
| |
|
||||| |
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|
| T |
23222894 |
ttgaa |
23222890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 23230839 - 23230593
Alignment:
| Q |
18 |
gaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcgga |
117 |
Q |
| |
|
|||||||||| || ||||||||||| |||||| | || ||||| ||||| ||| | || |||||||| ||||||||||||||||| |||||||| || || |
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| T |
23230839 |
gaaggagaggctgccctggtatgccgttggccatgcgccaattgcccaccgtagtcggggctttggtgcaatgctttgagtggaaaatgcttgactccga |
23230740 |
T |
|
| Q |
118 |
atgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaaga |
217 |
Q |
| |
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| |||| || ||||||| |||| | |||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| |
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| T |
23230739 |
aggtaaaatattagatcgaggcaaaacaatcgatatggatgaaagacctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaaga |
23230640 |
T |
|
| Q |
218 |
ttgaacccccttacatttcttcaactttaataaaagggaatttgtga |
264 |
Q |
| |
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||||||| ||| |||||||| |||| ||||||||||||||||| |
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|
| T |
23230639 |
atgaacccaaatacttttcttcagcttttgtaaaagggaatttgtga |
23230593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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