View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17590_low_14 (Length: 231)
Name: NF17590_low_14
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17590_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 48645834 - 48645633
Alignment:
| Q |
13 |
caaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645834 |
caaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgag |
48645735 |
T |
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| Q |
113 |
aaagcagctaaagcatttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctctcaatttggatatcaatgcag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645734 |
aaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaaatttcaatttccttgatacacctctcaatttggatatcaatgcag |
48645635 |
T |
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| Q |
213 |
tt |
214 |
Q |
| |
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|| |
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|
| T |
48645634 |
tt |
48645633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 48654247 - 48654046
Alignment:
| Q |
13 |
caaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654247 |
caaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgag |
48654148 |
T |
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| Q |
113 |
aaagcagctaaagcatttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctctcaatttggatatcaatgcag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654147 |
aaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaaatttcaatttccttgatacacctctcaatttggatatcaatgcag |
48654048 |
T |
|
| Q |
213 |
tt |
214 |
Q |
| |
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|| |
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|
| T |
48654047 |
tt |
48654046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 3573750 - 3573912
Alignment:
| Q |
28 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
127 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
3573750 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3573849 |
T |
|
| Q |
128 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacct |
190 |
Q |
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| T |
3573850 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaatacacct |
3573912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 3551332 - 3551496
Alignment:
| Q |
28 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||| ||||||||| | || ||||||||||||||||||||||| || ||||||||||| | |||| |
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| T |
3551332 |
gagaaattggggaaaatgggtatctgagattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagagaaagcagcaagagca |
3551431 |
T |
|
| Q |
128 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
192 |
Q |
| |
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|||||||| || ||||||||||| || | || |||||||| ||||||||||| | | |||||||| |
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| T |
3551432 |
tttgatgcagccctttattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3551496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 3589042 - 3589206
Alignment:
| Q |
28 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
3589042 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3589141 |
T |
|
| Q |
128 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
192 |
Q |
| |
|
|||||||| || || |||||||| || | || |||||||| ||||||||||| | | |||||||| |
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| T |
3589142 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3589206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 3562506 - 3562670
Alignment:
| Q |
28 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
3562506 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3562605 |
T |
|
| Q |
128 |
tttgatgctgcactttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
192 |
Q |
| |
|
|||||||| || || |||||||| || | || |||||| | ||||||||||| | | |||||||| |
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| T |
3562606 |
tttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctct |
3562670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 10025200 - 10025353
Alignment:
| Q |
39 |
gaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgc |
138 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||| || || |||||||||| |||||||||||| || |
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| T |
10025200 |
gaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgcagc |
10025299 |
T |
|
| Q |
139 |
actttattgtcttcgcgatcgtcatgcaaatttcaatttccttgatacacctct |
192 |
Q |
| |
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|| |||||||| || | || |||||| | ||||||||||| | |||||||||| |
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| T |
10025300 |
cctatattgtctacgtggtcctcatgctagtttcaatttccctaatacacctct |
10025353 |
T |
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