View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17590_low_5 (Length: 353)
Name: NF17590_low_5
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17590_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 46820478 - 46820147
Alignment:
| Q |
12 |
acattgtacctattcattttgaccgtgttagcgagaatttgaaatggagtgacttttttccagaatggattgatgaggaaggaaaaccggacgagcctaa |
111 |
Q |
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| T |
46820478 |
acattgtacctattcattttgaccgtgttagcgagaatttgaaatggagtgacttttttccagaatggattgatgaggaaggaaaaccggacgagcctaa |
46820379 |
T |
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| Q |
112 |
atgtccaaacatgcctatgccaagtttggcgaattacaaagatctcgatgttgtgatggctatggttccatgtagggaggaatccatggaggaaaaagga |
211 |
Q |
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| T |
46820378 |
atgtccaaacatgcctatgccaagtttggcgaattacaaagatctcgatgttgtgatggctatggttccatgtagggaggaatccatggaggaaaaagga |
46820279 |
T |
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| Q |
212 |
attagagatttgttcaggttacaagttaatttagtggtggctaatttggttgtggaaaacaagtggaaagaaaagtcggagagcaatggtaaagatatgt |
311 |
Q |
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| T |
46820278 |
attagagatttgttcaggttacaagttaatttagtggtggctaatttggttgtggaaaacaagtggaaagaaaagtcggagagcaatggtaaagatatgt |
46820179 |
T |
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| Q |
312 |
atattgtgtttgttgggtcatgtggtcctatg |
343 |
Q |
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| T |
46820178 |
atattgtgtttgttgggtcatgtggtcctatg |
46820147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 36881641 - 36881686
Alignment:
| Q |
224 |
ttcaggttacaagttaatttagtggtggctaatttggttgtggaaa |
269 |
Q |
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| T |
36881641 |
ttcaggttacaagttaatttggtggtggctaatttggtagtggaaa |
36881686 |
T |
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