View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17590_low_6 (Length: 348)
Name: NF17590_low_6
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17590_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 36987207 - 36986892
Alignment:
| Q |
15 |
atgaaaaatagtcaaatgatcaacaagctacgcaacaaattagtcaaatgaaaaatattgacttccattcagacatctctctttaggataaggaaaaaca |
114 |
Q |
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| T |
36987207 |
atgaaaaatagtcaaatgatcaacaagctacgcaaccaattagtcaaatgaaaaatattgacttccattcagacatctctctttaggataaggaaaaaca |
36987108 |
T |
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| Q |
115 |
aaagcatatttacctttggaggcaattcctgaacagtagatttttcatcaaatatacaagcaaattcttgagcttccagcttcaatcgattattttcttc |
214 |
Q |
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| T |
36987107 |
agagcaaatttacctttggaggcaaatcctgaatagtagatttttcatcaaatatacaagcaaattcttgagcttccagcttcaatcgattattttcttc |
36987008 |
T |
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| Q |
215 |
atagaaagatgacatttatattatataagcaaggtgtttcaggttaatagaaataattacctgcaaaacattttatgagattcagatatatataagaagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36987007 |
atagaaagatgacatttatattatataagcaaggtgtttcaggttagtagaaataattacctgcaaaacattttatgagattcagatatatataagaagc |
36986908 |
T |
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| Q |
315 |
ttccttctgaatattg |
330 |
Q |
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|||||||||||||||| |
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| T |
36986907 |
ttccttctgaatattg |
36986892 |
T |
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