View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17590_low_8 (Length: 325)
Name: NF17590_low_8
Description: NF17590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17590_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 24914536 - 24914717
Alignment:
| Q |
9 |
ttgcttgcgcagaagtgtctgacgacttgtttgtatgatcaacaactctttctgggagaatgtttacttgcgtagcagagttagacgacttgattgcaag |
108 |
Q |
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| T |
24914536 |
ttgcttgcgcagaagtgtctgacgactggtttgtatgatcaacaactctttctgggagaatgtttacttgcgcagcagagttagacgacttgattgcaag |
24914635 |
T |
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| Q |
109 |
atcaacaattttttcctgnnnnnnnttccaaaacatctaagcccactactgaataagtatataaatataaacaaagaacatt |
190 |
Q |
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| T |
24914636 |
atcaacaattttttcctgaaaaaaaatccaaaacatctaagcccactactgaacaagtatataaatataaacaaaaaacatt |
24914717 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 24914470 - 24914530
Alignment:
| Q |
12 |
cttgcgcagaagtgtctgacgacttgtttgtatgatcaacaactctttctgggagaatgtt |
72 |
Q |
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| T |
24914470 |
cttgcgcagcagaatctgatgacttgtttgcatgataaacaactctttctgggagaatgtt |
24914530 |
T |
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