View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17591_high_11 (Length: 258)
Name: NF17591_high_11
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17591_high_11 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 9432 - 9672
Alignment:
| Q |
18 |
tatccaatttcttaacagatggaatcagtgtaatgtgtaacatgcttctagttaaacaagnnnnnnntaactttgtgaaacg-cccatccctactgattg |
116 |
Q |
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| T |
9432 |
tatccaatttcttaacagatggaatcagtgtaatgtgtaacatgcttctagttaaacaagaaaaaaataactttgtggaacgccccatccctactgattg |
9531 |
T |
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| Q |
117 |
aattctcatattgtagcagacaatgttttacatacnnnnnnntatacacggaagaaacaattagcttttcttatatgataagtacaatatgacaatgaag |
216 |
Q |
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| T |
9532 |
aattctcatattgtagcagacaatgttttacatacaaaaaattatacacggaagaaacaattagcttttcttatatgataagtacaatat-acaatgaag |
9630 |
T |
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| Q |
217 |
cacaaaagcaggtctccatgtgcctgaaatgaacctacattt |
258 |
Q |
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| T |
9631 |
cacaaaagcaggtctccatgtacctgaaatgaacctacattt |
9672 |
T |
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