View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17591_low_1 (Length: 525)
Name: NF17591_low_1
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17591_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 2 - 511
Target Start/End: Original strand, 52682455 - 52682964
Alignment:
| Q |
2 |
tcaacaaaattaataaagagtacgaagttaaggtgaacgatgatgaaatctatatgtattttgacagactaaaaaatttatacaatttattgtttaaaaa |
101 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52682455 |
tcaacaaaattaataaagagtacgaagttaaagtgaacgatgatgaaatctatatgtattttgacagactaaaaaatttatacaatttattgtttaaaaa |
52682554 |
T |
|
| Q |
102 |
acaagcaaataccttgtcttttttgcaaagtaattgacgactttgatacgggtaatcttcctcggtgtcaatccccttgttgtcaatgataaattggtat |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52682555 |
acaagcaaataccttgtcttttttgcaaagcaattgacgactttgatacgggtaatcttcctcggtgtcaatccccttgttgtcaatgataaattggtat |
52682654 |
T |
|
| Q |
202 |
gcatagtccatgagtccaccatcacaaccactattataagttctatcgcaatctaccaattcttgttcagaaaggctcacaagagaccctgtcacaattt |
301 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52682655 |
gcatagtccatgagtccaccatcacaaccactattataagttctatcgcaatctaccaattcttgttcagaaaggctcacaagagaccctgtcacaattt |
52682754 |
T |
|
| Q |
302 |
tatttatcccttcgatagcaccggtagccgaaaatgaccaacaagcacctgcataatatacatagaatattattggtgatttagagctactttaaataaa |
401 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52682755 |
tatttatcccttcgatagcaccggtagccgaaaatgaccaacaagcacctgcataatatacatagaatattattggtgatttagagctactttaaataaa |
52682854 |
T |
|
| Q |
402 |
tttttccaatgcttaaagaaataaagcaaaatgatcttataataatcataagtgttctaaatcatagcttctcacataggttgagaacaagttgaggtct |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52682855 |
tttttccaatgcttaaagaaataaagcaaaatgatcttataataatcataagtgttctaaatcatagcttctctcataggttgagaacaagttgaggtct |
52682954 |
T |
|
| Q |
502 |
tgagtggtgt |
511 |
Q |
| |
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|||||||||| |
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| T |
52682955 |
tgagtggtgt |
52682964 |
T |
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