View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17591_low_18 (Length: 235)
Name: NF17591_low_18
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17591_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 29936263 - 29936471
Alignment:
| Q |
10 |
gtagataatacttatcattttagaaatcaagagcccaaaagtgggcagtattgctccattcagcactgcagctatagtacccatcaataagactgaaatc |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936263 |
gtagaaaatacttatcattttagaaatcaagagcccaaaagtgggcattattgctccattcagcactgcagctatagtacccatcaataagactgaaatc |
29936362 |
T |
|
| Q |
110 |
tcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaaga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936363 |
tcaggcttgttaaaatatgccaggcgataaagtggcacttctggtggtgaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaaga |
29936462 |
T |
|
| Q |
210 |
agccatctg |
218 |
Q |
| |
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||||||||| |
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| T |
29936463 |
agccatctg |
29936471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 51157907 - 51157699
Alignment:
| Q |
10 |
gtagataatacttatcattttagaaatcaagagcccaaaagtgggcagtattgctccattcagcactgcagctatagtacccatcaataagactgaaatc |
109 |
Q |
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||||| |||| ||||||||||||||||||| ||||||||| |||||| ||||||||| | ||||||||||||||| || ||||| |||| ||| | | || |
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| T |
51157907 |
gtagaaaatatttatcattttagaaatcaatagcccaaaaatgggcattattgctccttgcagcactgcagctattgtccccattaatatgaccgcagtc |
51157808 |
T |
|
| Q |
110 |
tcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaaga |
209 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||| ||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
51157807 |
tcaggcttgttataatatgccaggcgataaagtggcacttccggtggtgaagaaactgtcgaaggagaagcttgaggtccaccgtctgcagtttctaaga |
51157708 |
T |
|
| Q |
210 |
agccatctg |
218 |
Q |
| |
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||||||||| |
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| T |
51157707 |
agccatctg |
51157699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 51146760 - 51146560
Alignment:
| Q |
18 |
tacttatcattttagaaatcaagagcccaaaagtgggcagtattgctccattcagcactgcagctatagtacccatcaataagactgaaatctcaggctt |
117 |
Q |
| |
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|||||||||||||||||| |||||||||| | ||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||| |
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| T |
51146760 |
tacttatcattttagaaactaagagcccaataacgggcattattgctccatgcagcactgcagttatagtccccatcaataagactggaatctcaggctt |
51146661 |
T |
|
| Q |
118 |
gttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatct |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||| | ||||| |||| ||||||||||| |||||| |||| |||||||| |||||| |
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| T |
51146660 |
gttaaaatatgccaggcgataaagtggcacttctggtggtgaagaattttttgaaggagacgcttgaggtcccccatcttcagtttctaagaatccatct |
51146561 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
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|
| T |
51146560 |
g |
51146560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 51200701 - 51200497
Alignment:
| Q |
10 |
gtagataatacttatcattttagaaatcaagagcccaaaagtgggcagtattgctccattcagcactgcagctatagtacccatcaataagactgaaatc |
109 |
Q |
| |
|
||||| |||||| |||||||| |||| |||||| |||||| | || | |||| | |||| || ||||||||||||||| || || | |||||| | |||| |
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| T |
51200701 |
gtagaaaatactaatcattttcgaaagcaagaggccaaaaattggtaatattacaccatgcaacactgcagctatagttcctataagtaagacaggaatc |
51200602 |
T |
|
| Q |
110 |
tcaggcttgttaaaatatgccaggcgataaagtggcatttctggtggttaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaaga |
209 |
Q |
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|| |||||||| ||||| ||||||||||||||||| | |||||||||| ||||||| |||||| ||| | |||| ||||||||||||||| | ||| ||| |
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| T |
51200601 |
tcgggcttgtttaaataggccaggcgataaagtggaacttctggtggtgaagaaaccgttgaaggaggaacttgtggtccaccatctgcaatttctgaga |
51200502 |
T |
|
| Q |
210 |
agcca |
214 |
Q |
| |
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||||| |
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|
| T |
51200501 |
agcca |
51200497 |
T |
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