View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17591_low_19 (Length: 206)

Name: NF17591_low_19
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17591_low_19
NF17591_low_19
[»] chr7 (2 HSPs)
chr7 (10-186)||(23367644-23367820)
chr7 (147-175)||(31954290-31954318)
[»] chr3 (5 HSPs)
chr3 (23-145)||(24229523-24229645)
chr3 (110-172)||(48506993-48507054)
chr3 (120-172)||(13349446-13349498)
chr3 (120-172)||(48506468-48506519)
chr3 (147-175)||(48648231-48648259)
[»] chr5 (1 HSPs)
chr5 (133-175)||(19128797-19128839)
[»] chr4 (11 HSPs)
chr4 (133-175)||(43146699-43146741)
chr4 (140-175)||(8248510-8248545)
chr4 (140-175)||(8266175-8266210)
chr4 (133-175)||(5046012-5046054)
chr4 (133-175)||(8247724-8247766)
chr4 (133-175)||(8265389-8265431)
chr4 (133-175)||(47688462-47688504)
chr4 (110-172)||(56262509-56262570)
chr4 (133-174)||(45921065-45921106)
chr4 (134-175)||(55001424-55001465)
chr4 (133-173)||(12920257-12920297)
[»] chr6 (2 HSPs)
chr6 (133-172)||(21133209-21133248)
chr6 (133-170)||(19654002-19654039)
[»] chr8 (1 HSPs)
chr8 (140-174)||(26654367-26654401)
[»] chr2 (1 HSPs)
chr2 (23-64)||(29719692-29719733)
[»] chr1 (2 HSPs)
chr1 (147-175)||(25469083-25469111)
chr1 (120-172)||(32038507-32038559)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 23367820 - 23367644
Alignment:
Q  10 cgaagaatatcatggcaaacaatgtttttaatttgatttttgcaatgactgaacattaatagtgtgtgagcgagagaaatgatactcatgaaatagagac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  23367820 cgaagaatatcatggcaaacaatgtttttaatttgatttttgcaatgactgaacattaatagtgtgtgagtgagagaaatgatactcacgaaatagagac 23367721  T
Q  110 gtagattagctatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaatccgatagtgtcaac 186  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23367720 gtagattagctatggacttttggattaaacaaaatacacggttgagatttggtgtcaacgaatccgatagtgtcaac 23367644  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 31954290 - 31954318
Alignment:
Q  147 acggttaagatttggtgtcaacgaatccg 175  Q
    |||||||||||||||||||||||||||||    
T  31954290 acggttaagatttggtgtcaacgaatccg 31954318  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 24229523 - 24229645
Alignment:
Q  23 ggcaaacaatgtttttaatttgatttttgcaatgactgaacattaatagtgtgtgagcgagagaaatgatactcatgaaatagagacgtagattagctat 122  Q
    ||||||||||||||| ||||||||||||  |||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||| ||||||  |||    
T  24229523 ggcaaacaatgttttcaatttgattttttgaatgactgaacaataatggtgtgtgagtgagagaaatgatactcacgaaatagagacgaagattaattat 24229622  T
Q  123 ggacctttgaattaaacaaaata 145  Q
     ||||||||| ||||||||||||    
T  24229623 tgacctttgagttaaacaaaata 24229645  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 48506993 - 48507054
Alignment:
Q  110 gtagattagctatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 172  Q
    ||||||||  |||||||||||| |||||| || ||| |||||| |||||||||||||||||||    
T  48506993 gtagattaattatggacctttggattaaa-aatatagacggttgagatttggtgtcaacgaat 48507054  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 13349498 - 13349446
Alignment:
Q  120 tatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 172  Q
    |||||| | ||| |||||| ||| || ||||||||||||||||||||||||||    
T  13349498 tatggatcattggattaaataaattagacggttaagatttggtgtcaacgaat 13349446  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 48506519 - 48506468
Alignment:
Q  120 tatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 172  Q
    |||||||||||| |||||| || ||| |||||| |||||||||||||||||||    
T  48506519 tatggacctttggattaaa-aatatagacggttgagatttggtgtcaacgaat 48506468  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 48648259 - 48648231
Alignment:
Q  147 acggttaagatttggtgtcaacgaatccg 175  Q
    |||||||||||||||||||||||||||||    
T  48648259 acggttaagatttggtgtcaacgaatccg 48648231  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 19128839 - 19128797
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  19128839 attaaataaaataaacggttaagatttggtgtcaacgaatccg 19128797  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 43146741 - 43146699
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  43146741 attaaataaaataaacggttaagatttggtgtcaacgaatccg 43146699  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 8248510 - 8248545
Alignment:
Q  140 aaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||||||||||||||||||||||||||    
T  8248510 aaaatagacggttaagatttggtgtcaacgaatccg 8248545  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 8266175 - 8266210
Alignment:
Q  140 aaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||||||||||||||||||||||||||    
T  8266175 aaaatagacggttaagatttggtgtcaacgaatccg 8266210  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 5046054 - 5046012
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||| |||||| ||||||||||||||||||||||    
T  5046054 attaaataaaataaacggttgagatttggtgtcaacgaatccg 5046012  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 8247766 - 8247724
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||| ||||||||||||| |||||||||||||||    
T  8247766 attaaataaaatagacggttaagattttgtgtcaacgaatccg 8247724  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 8265431 - 8265389
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||| ||||||||||||| |||||||||||||||    
T  8265431 attaaataaaatagacggttaagattttgtgtcaacgaatccg 8265389  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 47688462 - 47688504
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    |||||| |||||| |||||| ||||||||||||||||||||||    
T  47688462 attaaataaaataaacggttgagatttggtgtcaacgaatccg 47688504  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 56262570 - 56262509
Alignment:
Q  110 gtagattagctatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 172  Q
    ||||||||  |||||||||||| |||||| || ||| |||||| |||||||||||||||||||    
T  56262570 gtagattaattatggacctttggattaaa-aatatagacggttgagatttggtgtcaacgaat 56262509  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 45921065 - 45921106
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatcc 174  Q
    |||||| |||||| |||||||||||||||||||||| |||||    
T  45921065 attaaataaaataaacggttaagatttggtgtcaacaaatcc 45921106  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 55001424 - 55001465
Alignment:
Q  134 ttaaacaaaatacacggttaagatttggtgtcaacgaatccg 175  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  55001424 ttaaataaaataaacggttaagatttagtgtcaacgaatccg 55001465  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 12920257 - 12920297
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaatc 173  Q
    |||||| |||||| |||||| ||||||||||||||||||||    
T  12920257 attaaataaaataaacggttgagatttggtgtcaacgaatc 12920297  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 21133209 - 21133248
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacgaat 172  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  21133209 attaaataaaataaacggttaagatttggtgtcaacgaat 21133248  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 19654039 - 19654002
Alignment:
Q  133 attaaacaaaatacacggttaagatttggtgtcaacga 170  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  19654039 attaaataaaataaacggttaagatttggtgtcaacga 19654002  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 26654367 - 26654401
Alignment:
Q  140 aaaatacacggttaagatttggtgtcaacgaatcc 174  Q
    |||||| ||||||||||||||||||||||||||||    
T  26654367 aaaatagacggttaagatttggtgtcaacgaatcc 26654401  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 29719733 - 29719692
Alignment:
Q  23 ggcaaacaatgtttttaatttgatttttgcaatgactgaaca 64  Q
    ||||||||||||||| ||||||| |||| |||||||||||||    
T  29719733 ggcaaacaatgttttcaatttgagtttttcaatgactgaaca 29719692  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 25469083 - 25469111
Alignment:
Q  147 acggttaagatttggtgtcaacgaatccg 175  Q
    |||||||||||||||||||||||||||||    
T  25469083 acggttaagatttggtgtcaacgaatccg 25469111  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 32038559 - 32038507
Alignment:
Q  120 tatggacctttgaattaaacaaaatacacggttaagatttggtgtcaacgaat 172  Q
    |||||| | |||||||||| ||| || |||||| |||||||||||||||||||    
T  32038559 tatggatcattgaattaaataaattagacggttgagatttggtgtcaacgaat 32038507  T

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