View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17591_low_3 (Length: 453)
Name: NF17591_low_3
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17591_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 41787362 - 41786915
Alignment:
| Q |
18 |
caaggtatgcgattaagtaaaaccaaaataaactcatttgttgcatcacataataaaaaaggagtatttattattttggaacataaaagacaaattgaaa |
117 |
Q |
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| T |
41787362 |
caaggtatgcgattaagtaaaaccaaaataaactcatttgttgcatcacataataaaaaaggagtatttgttattttggaacataaaagacaaattgaaa |
41787263 |
T |
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| Q |
118 |
ca-----------------cttgaaattgaaaacttaaaacagtacatataggacagttaaagatgtggattggaagcagaatctaatacatgaaccaaa |
200 |
Q |
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| T |
41787262 |
catatagaaaatacaaagacttgaaattgaaaacttaaaacagtacatataggacagttaaagatgtggattggaagcagaatcaaatacatgaaccaaa |
41787163 |
T |
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| Q |
201 |
ttgctagtattttaacattattaactttgacaaatttaaaacgggctatatctcc--atatttgagttgactctgggtacaaaattcattccctccatct |
298 |
Q |
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| T |
41787162 |
ttgctagtattttaatattattaactttgacaaatttaaaacgggctatatctccatatatttgagttgactctgggtacaaaattcattccctccatct |
41787063 |
T |
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| Q |
299 |
cattcctattttggtgctccttcttggctagnnnnnnnnccttccagtctttaaccatttggaggaaattctatttgaggtgtgtcacactaaatgttag |
398 |
Q |
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| T |
41787062 |
cattcctattttggtgctccttcttggctagttttttttccttccagtctttaaccatttggaggaaattctatttgaggtgtgtcacactaaatgttag |
41786963 |
T |
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| Q |
399 |
tatgtac--ctctcccaatcacaatttcaattgattccacaggttctg |
444 |
Q |
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| T |
41786962 |
tatgtacctctctcccaatcacaatttcaattgattccacacgttctg |
41786915 |
T |
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