View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17591_low_4 (Length: 390)
Name: NF17591_low_4
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17591_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 23971493 - 23971855
Alignment:
| Q |
11 |
catagggatgtctggaaaatcttgcttggtaatgacaatggcacctgtgatagtgagtctgaatcgatgatcacaggccttgacaacggtgtcattggtg |
110 |
Q |
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| T |
23971493 |
catagggatgtctggaaaatcttgcttggtaatgacaatggcatctgtgatagtgagtctgaat-gatgatcacaggccttgacaacggtgtcattgttg |
23971591 |
T |
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| Q |
111 |
ctaaccttaaagttctccctttcataagtttggttcaaaatcagctgaggtttaaatgtattgagtaattctttagggagcgtaatatgaattatatcac |
210 |
Q |
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| T |
23971592 |
ctaaccttaaagttctccatttcataagtttggttcaaaatcagtcgaggtttaaatttattgagttattctttagggagcgtaatatgaattacatcac |
23971691 |
T |
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| Q |
211 |
cctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaaagaatcaaatagatagaaaagaaaaccatacctcagcatc |
310 |
Q |
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| T |
23971692 |
cctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaatgaatcaaatagatagaaaagaaaaccatacctcaacatc |
23971791 |
T |
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| Q |
311 |
cttaacgatcatttcatgatgttcacttttgtatttgccaataactggccaatgatcaacaatc |
374 |
Q |
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| T |
23971792 |
cttaacgatcatttcaagatgttcacttttgtatttgccaataactggccaaagatcaacaatc |
23971855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 33538808 - 33538445
Alignment:
| Q |
11 |
catagggatgtctggaaaatcttgcttggtaatgacaatggcacctgtgatagtgagtctgaatcgatgatcacaggccttgacaacggtgtcattggtg |
110 |
Q |
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| T |
33538808 |
catagggatgtctggaaaatcttgcttgctaatgacagtggcacctgtgattgtgagtctaaatcgatgatcacaggccttgacaacgctgtcattgttg |
33538709 |
T |
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| Q |
111 |
ctaaccttaaagttctccctttcataagtttggttcaaaatcagctgaggtttaaatgtattgagtaattctttagggagcgtaatatgaattatatcac |
210 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||| |
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| T |
33538708 |
ctcaccttaaagttctccatttcataagtttggttcaaaaacagctgaggtttaaatgcattgagaaattctttcgggagcgtaatatgaattacatcag |
33538609 |
T |
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| Q |
211 |
cctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaaagaatcaaatagatagaaaagaaaaccatacctcagcatc |
310 |
Q |
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||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||| ||||||| |||||||||| | ||| |||||||| |
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| T |
33538608 |
cctgtatggttgtaaattttgaagtagtcagtaaagcgatattgaaatgaagttattgaaagaatgaaatagactgaaaagaaaagcctacttcagcatc |
33538509 |
T |
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| Q |
311 |
cttaacgatcatttcatgatgttcacttttgtatttgccaataactggccaatgatcaacaatc |
374 |
Q |
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| T |
33538508 |
cttaatgatcatttcaagactttcacttttgtatttgccaataaccggccaaagatcaacaatc |
33538445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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