View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17591_low_5 (Length: 344)
Name: NF17591_low_5
Description: NF17591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17591_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 137 - 326
Target Start/End: Complemental strand, 14088058 - 14087870
Alignment:
| Q |
137 |
ctaaccataactcgactaatcacacgtgaaaccacattgtagttcatttgatcgagaaaaaa--gattgaacctttgtcagaaaaaagaacaaatcaaag |
234 |
Q |
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| T |
14088058 |
ctaaccataactcgactaatcacacgtgaaaccacattgtagttcatttgatccaaaaaaaaaagattgaacctttgtcagaaaaaagaacaaaccaaag |
14087959 |
T |
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| Q |
235 |
ttcgactaatcgtatgaagcctcattgtagttcattttattaactagaagaaatgtcaaacctttgtnnnnnnnncaaactaaccacaattc |
326 |
Q |
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| T |
14087958 |
ttcgactaatcgtatgaagtctcattgtagttcatt---ttaactagaagaaatgtcaaacctttgtcgaaaaaacaaactaaccacaattc |
14087870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 14088692 - 14088600
Alignment:
| Q |
147 |
ctcgactaatcacacgtgaaaccacattgtagttcatttgatcgagaaaaaagattgaacctttgtcagaaaaaagaacaaatcaaagttcgact |
241 |
Q |
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| T |
14088692 |
ctcgactaatcacaagtgaaaccacattgtagttcatctgatccag-aaaaagattgaacctttgtca-aaaaggaaacaaaccaaagttcgact |
14088600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 14078357 - 14078206
Alignment:
| Q |
145 |
aactcgactaatcacacgtgaaaccacattgtagttcatttgatcgagaaaaaagattgaacctttgtcagaaaaaagaacaaatcaaagttcgactaat |
244 |
Q |
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| T |
14078357 |
aactcggctaatcacaagtgaaaccatgttgtagttcatctgattca-aaaatagattgagcttttgtcagatagca-aataaaccaaagttcgactaat |
14078260 |
T |
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| Q |
245 |
cgta--tgaagcctcattgtagttcattttattaactagaagaaatgtcaaaccttt |
299 |
Q |
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| T |
14078259 |
cataagtgaagtctcgttgtagttcatttgat---ctagaagaaatgtcaaaccttt |
14078206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29655075 - 29655178
Alignment:
| Q |
1 |
ttacaatcacaattgtgtgctgcacatcttttgcgactatcaacaattgttgcaaggacaaaatttaagtacgaactgttctttctattctcaactaaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29655075 |
ttacaatcacaattgtgtgctgcatgtcttttgcgactatcaacaattgttgcaaggacaaaatttaagtacgaactgttctttctattctcaactaaaa |
29655174 |
T |
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| Q |
101 |
aaaa |
104 |
Q |
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|||| |
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| T |
29655175 |
aaaa |
29655178 |
T |
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