View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17592_high_1 (Length: 525)
Name: NF17592_high_1
Description: NF17592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17592_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 31496409 - 31496889
Alignment:
| Q |
19 |
ataagtcgtcagtaagaaggatgaatcatgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctatta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31496409 |
ataagtcgtcagtaagaaggatgaatcatgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctatta |
31496508 |
T |
|
| Q |
119 |
taaatgtacatggcctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31496509 |
taaatgtacatggcctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattgg |
31496608 |
T |
|
| Q |
219 |
aagccaacgtcttcaatgaagaggaattcatcatctgagtatctttattcacttttaccttccgagacgggttccattgacttgcaagatcaatcatctg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
31496609 |
aagccaacgtcttcaatgaagaggaattcatcatctgagtatctttattcacttttaccttccgagacgggctccattgacttgcaagatcaatcatttg |
31496708 |
T |
|
| Q |
319 |
gaagtgaacaattgtattctgatgaagaacctacgaagtcttcggtatcgatatgaaatgttttcatattgaattttatttggaagtcgctcannnnnnn |
418 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31496709 |
gaagtgaacaattggattctgatgaagaacctacgaagtcttcggtatcgatatgaaatgttttcatattgaattttatttggaagtcgctcatttttat |
31496808 |
T |
|
| Q |
419 |
nnnnnngaacggaaaatattagtatgttggttgttaattgttatgttagtattttctcctttaccaaggctcgaacatttactcattag |
507 |
Q |
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| T |
31496809 |
tttttt-aacggaaaatattagtatgttgg-------ttgttatgttagtattttctcctttaccaaggttcgaacatttactcattag |
31496889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 45 - 401
Target Start/End: Original strand, 40844862 - 40845213
Alignment:
| Q |
45 |
catgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctattataaatgtacatggcctaattgttttg |
144 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40844862 |
catgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaagaaggggaaaatcaaagaagctattataaatgtacatggcctaattgttttg |
40844961 |
T |
|
| Q |
145 |
tgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattggaagccaacgtcttcaatgaagaggaa |
244 |
Q |
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| T |
40844962 |
tgaagaaaaaggttgagt-----atagatggagaaattattgagacattatacaaaggtacacataatcattgtaagccaacgtcttcaatgaagaggaa |
40845056 |
T |
|
| Q |
245 |
ttcatcatctgagtatctttattcacttttaccttccgagacgggttccattgacttgcaagatcaatcatctggaagtgaacaattgtattctgatgaa |
344 |
Q |
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| T |
40845057 |
ctcatcatctgagtatctttattcacttttaccttctgagactggccctattgacttgctagatcaatcatttggcagtgaacaattggattctgatgaa |
40845156 |
T |
|
| Q |
345 |
gaacctacgaagtcttcggtatcgatatgaaatgttttcatattgaattttatttgg |
401 |
Q |
| |
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|||||| |||||||| ||||| |||||||||||||| |||||||| || |||||| |
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|
| T |
40845157 |
gaacctgtaaagtcttcagtatcaatatgaaatgttttgatattgaagttgatttgg |
40845213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 31389143 - 31389307
Alignment:
| Q |
33 |
agaaggatgaatcatgatgatgggtataattgg-aaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctattataaatgtacatgg |
131 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||| || ||||||||| || |||||||||||||||||| ||||||||||||||| || ||| |
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| T |
31389143 |
agaagggtgaatcatgatgatgggtataattggaaaaaaatacgaagagaaaagagtaaaaggaagtgaaaatcagagaagctattataaa--tatgtgg |
31389240 |
T |
|
| Q |
132 |
cctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactataca |
198 |
Q |
| |
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||||||| |||||||||||| |||| ||||||||||||||| ||| ||||||||||| |||||| |
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| T |
31389241 |
tataattgtgttgtgaagaaaagagttgtgagaacaatagatggcgaaattattgagacaatataca |
31389307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 31461813 - 31462039
Alignment:
| Q |
32 |
aagaaggatgaatcatgatgatgggtataattggaaaaagtatgaagagaaagtagcaaaaggaagtgaaaatcaaagaagctattataaatgtacatgg |
131 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||| || |||||| || ||| |||||||||||||||||| ||||||||| ||||||||| | | |
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| T |
31461813 |
aagaagggtgaatcatgatgacaggtataattggaaaaaatacgaagaggaa-tagtaaaaggaagtgaaaatcagagaagctataataaatgtatgtag |
31461911 |
T |
|
| Q |
132 |
cctaattgttttgtgaagaaaaaggttgagagaacaatagatggagaagttattgagacactatacaaaggtacacataatcattggaagccaacgtctt |
231 |
Q |
| |
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||||||| | |||||||| ||| |||| ||||||||| |||| ||| |||||| |||| ||||| |||||||||||||| ||||| | || |
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| T |
31461912 |
cctaattttgttgtgaaggaaagagttgtgagaacaattgatgaagagattattgtgacaatatac------acacataatcattgtaagcctaaaaatt |
31462005 |
T |
|
| Q |
232 |
caatgaagaggaattcatcatctgagtatcttta |
265 |
Q |
| |
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||| ||| |||||||||| ||||||||||||||| |
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| T |
31462006 |
caaagaaaaggaattcattatctgagtatcttta |
31462039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 6802081 - 6802045
Alignment:
| Q |
450 |
tgttaattgttatgttagtattttctcctttaccaag |
486 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||| |
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| T |
6802081 |
tgttaattgttatgttagtattttcttccttaccaag |
6802045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 8038677 - 8038633
Alignment:
| Q |
176 |
agaagttattgagacactatacaaaggt-acacataatcattgga |
219 |
Q |
| |
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|||| |||||||||||||||| |||||| |||||||||||||||| |
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| T |
8038677 |
agaacttattgagacactatagaaaggtaacacataatcattgga |
8038633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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