View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17592_high_2 (Length: 347)
Name: NF17592_high_2
Description: NF17592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17592_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 53240248 - 53240590
Alignment:
| Q |
1 |
ctttcaacaacaaaaagtactgctccccggagagtaatgtggtttatagtaattggatttaacacgttgagagcaacacctatatatgctaaagtttcat |
100 |
Q |
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| T |
53240248 |
ctttcaacaacaaaaagtactgatccccggagagtaatgtggtttatagtaattggatttaacacgttgagagcaacacctat----gctaaagtttcat |
53240343 |
T |
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| Q |
101 |
tttcgaatggattgagattgactacggtcatgcagtatattcacggctatcgttggatggcaattgaagttcatattttaacttagtattttgtatttta |
200 |
Q |
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| T |
53240344 |
tttcgaatggattgagattgactacggtcatgcagtatattcacggctgtcgttggatggcagttgaagttcatattttaacttagtattttgtatttta |
53240443 |
T |
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| Q |
201 |
aaactgtctgatttcaataacgaccacgatggagccacccctttgattgcgtcaatttttggacagaaaatcgtgtttcaatcttttggatatgtaggca |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53240444 |
aaactgtctgatttcaataacgaccacgatggaaccacccctttgattgcgtcaatttttggacagaaattcgtgtttcaatcttttggatatgtaggca |
53240543 |
T |
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| Q |
301 |
actctttagcgttaatgttggactgagctaaaaaattgaccacgttt |
347 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53240544 |
actctttagcgttaatgttggacttagctaaaaaattgaccacgttt |
53240590 |
T |
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