View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17592_high_4 (Length: 261)
Name: NF17592_high_4
Description: NF17592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17592_high_4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 24811899 - 24811639
Alignment:
| Q |
1 |
atgaaggtacgatgagtaaacttttagaccaaagatatataaagagaatagaattgcaaaaagaaaataaaagagcgttaagaagttggtannnnnnnag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
24811899 |
atgaaggtacgatgagtaaacttttagaccaaagatatataaagagaatagaattgcaaaaagaaaacaaaagagcgttaagaagttggtatttttttag |
24811800 |
T |
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| Q |
101 |
ctacataacgttgaactacatttcaaagaaattagtttattgttctcacgatcatatccttcaagaaccatcttatatgaagtacttgaaatggtacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24811799 |
ctacataacgttgaactacatttcaaagaaattagtttattgttctcatgatcatatccttcaagaaccatcttatatgaagtacttgaaatggtacatt |
24811700 |
T |
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| Q |
201 |
tcaaataatactgctagccataattaggtgcaaatttttctcgtctggtttattgattgtt |
261 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
24811699 |
tcaaataatactgctagccgtaattaggcgcaaatttttctcgtctggtttattgattgtt |
24811639 |
T |
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