View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17592_high_6 (Length: 239)
Name: NF17592_high_6
Description: NF17592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17592_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 19980988 - 19981201
Alignment:
| Q |
18 |
aaagggtaccttcaaaacagcaggtttttgtgacaaatcacaaggaagcctttcaagctcaacagctcttctagcaattctaatggcaagttccttatga |
117 |
Q |
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| T |
19980988 |
aaagggtaccttcaaaacagcaggtttttgtgacaaatcacaaggaagcctttcaagctcaacagctcttctagcaattctaatggcaagttccttatga |
19981087 |
T |
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| Q |
118 |
agaaactgtgcagaaatcaacaaattcttggaagttggtttagaaccaaaatccatcatgtatcttaaactcacaccagtttgtttgaaacaaccccatt |
217 |
Q |
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| T |
19981088 |
agaaactgtgcagaaatcaacaaattcttggaagttggtttagaaccaaaatccatcatgtatcttaaactcacaccagtttgtttgaaacaaccccatt |
19981187 |
T |
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| Q |
218 |
tgtgtacttcttct |
231 |
Q |
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|||||||||||||| |
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| T |
19981188 |
tgtgtacttcttct |
19981201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 8046184 - 8046377
Alignment:
| Q |
36 |
agcaggtttttgtgacaaatcacaaggaagcctttcaagctcaacagctcttctagcaattctaatggcaagttccttatgaagaaactgtgcagaaatc |
135 |
Q |
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| T |
8046184 |
agcaggtttttttgacaaaccataaggaagactctcaagttcaatagctcgtctagcaattctaatagcaagttccttttgaagaaactgtgcagaaatc |
8046283 |
T |
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| Q |
136 |
aacaaattcttggaagttggtttagaaccaaaatccatcatgtatcttaaactcacaccagtttgtttgaaacaaccccatttgtgtacttctt |
229 |
Q |
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| T |
8046284 |
aacaaattcttatcagtaggttgtgaaccaaattccatcatatacctcaaactcacaccagtttgcttcaaacaaccccatttatgcacttctt |
8046377 |
T |
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