View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17592_low_4 (Length: 314)
Name: NF17592_low_4
Description: NF17592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17592_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 6639848 - 6639559
Alignment:
| Q |
17 |
aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaa-gataaagaatatgtagta |
115 |
Q |
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| T |
6639848 |
aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaaagataaagaatatgtagta |
6639749 |
T |
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| Q |
116 |
cnnnnnnngggaatgacggtaagcacggaaattcaattattttgtaagnnnnnnncatatccaaaatagtgaaaattagattttgcgcaaatctacttga |
215 |
Q |
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| T |
6639748 |
caaaaaaagggaatgacggtaagcacggaaattcaattattttgtaagaaaaaaacatatccaaaatagtgaaaattagattttgcgcaaatctacttga |
6639649 |
T |
|
| Q |
216 |
tcgaagatggaccaacgagagatgtgtgtctccatttttgcttggtctacgatgttaataattaaggtgagattgtaagaaaattatgatg |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6639648 |
tcgaagatggaccaacgagagatgtgtttctccatttttgcttggtctacgatg-taataattaaggtgagattgtaagaaaattatgatg |
6639559 |
T |
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