View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17593_low_1 (Length: 576)
Name: NF17593_low_1
Description: NF17593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17593_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Complemental strand, 52761648 - 52761091
Alignment:
| Q |
1 |
tatcaaataggttaaaagatgtggggaaatgtcccgtaagttgcgtttatttaaggagcaaatgaaaaaggcaaatatatctccgtcaacatggtcaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761648 |
tatcaaataggttaaaagatgtggggaaatgtcgcgtaagttgcgtttatttaaggagcaaatgaaaaaggcaaatatatctccgtcaacatggtcaaca |
52761549 |
T |
|
| Q |
101 |
agagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttctaccgtacatttaagatagcattgccatgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
52761548 |
agagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttctaccgtacatttaagagagcattgccatgtaa |
52761449 |
T |
|
| Q |
201 |
cacaatttttcttcatggatataggttaaactagcagaacttgaagctgagctaattgagattaattcaaacaatgagaagttgcagcacacttataatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761448 |
cacaatttttcttcatggatataggttaaactagcagaacttgaagccgagctaattgagattaattcaaacaatgagaagttgcagcacacttataatg |
52761349 |
T |
|
| Q |
301 |
aacttatagagtacaagcttgttttagagaaggtatagtttttaatgttcacctaaaccatcactaagctgttgatatttaattgtttgtgtttagagaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761348 |
aacttatagagtacaagcttgttttagagaaggtatagtttttaaagttcacctaaaccatcaccaagctgttgatatttaattgtttgtgtttagagaa |
52761249 |
T |
|
| Q |
401 |
gacaattagattcaagtttataattccttatttgtttttaccattttaggttggggagtttttctcttcggcacaaattagtgcagcaactcgccagaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761248 |
gacaattagattcaagtttataattccttatttgtttttaccattttaggttggggagtttttctcttcggcacaaattagtgcagcaactcgccagaga |
52761149 |
T |
|
| Q |
501 |
gagcttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatgg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52761148 |
gagcttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatgg |
52761091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University