View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17593_low_2 (Length: 541)
Name: NF17593_low_2
Description: NF17593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17593_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 154 - 306
Target Start/End: Original strand, 34970228 - 34970380
Alignment:
| Q |
154 |
aaccatgaaaatgttttgaagcatctggtgagatcaaatatcccaattatggtgaagaatttggaaaaacataaataaaagagagtggtatttgtttaac |
253 |
Q |
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| T |
34970228 |
aaccatgaaaatgttttgaagcatctggtgagatcaaatatcccaattatggtgaagaatttggaaaaacataaataaaagagagtggtatttgtttaac |
34970327 |
T |
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| Q |
254 |
taaatagcccattctatattttattccaccatatttaccatgcattcatgcgt |
306 |
Q |
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| T |
34970328 |
taaatagcccattctatattttattccaccatatataccatgcattcatgcgt |
34970380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 372 - 524
Target Start/End: Original strand, 34970446 - 34970597
Alignment:
| Q |
372 |
agaggttctttcagtcttttgcaacaacagaaaagacttataaaaagtcctcccctttttaccatatccctgtcttcttccattaaaatcccacaaaacc |
471 |
Q |
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| T |
34970446 |
agaggttctttcagtcttttgcaacaacagaaaagacttataaaaagtcctcccctttttaccatatccctgtcttcttccattaaaatcccacaaaacc |
34970545 |
T |
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| Q |
472 |
aaaaccctttcacctcccaaatgcctcttttcttcagttcatagaaagtttct |
524 |
Q |
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| T |
34970546 |
aaaaccctttcacctccc-aatgcctcttttcttcagttcatagaaagtttct |
34970597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 34970034 - 34970186
Alignment:
| Q |
1 |
ctcgaattgatctgaaaaagctattagccaattaannnnnnnnccgaacaaaaaataagggaagtagtggagtatagtttaagaatgatattgagtaaat |
100 |
Q |
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| T |
34970034 |
ctcgaattgatctgaaaaagctattagccaattaattatttttcctaacaaaaaataagggaagtagtggagtatagtttaagaatgatattgagtaaat |
34970133 |
T |
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| Q |
101 |
ctgctcgtgaaacattcatgaatgatgtttcgctatagctagcaatatccttg |
153 |
Q |
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| T |
34970134 |
ctgctcgtgaaacattcatgaatgatgtttcgctatacctagaaatatccttg |
34970186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 29606205 - 29606111
Alignment:
| Q |
51 |
aaaaataagggaagtagtggagtatagtttaagaatgatattgagta--aatctgctcgtgaaacattc-atgaatgatgtttcgctatagctag |
142 |
Q |
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| T |
29606205 |
aaaaacaagggtagtggtggggtatagtttaagaatggtattgagtaataatttgctcatgaaactttcgttggatgatgtttcgctataactag |
29606111 |
T |
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