View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17593_low_4 (Length: 301)
Name: NF17593_low_4
Description: NF17593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17593_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 35840954 - 35840682
Alignment:
| Q |
12 |
aagcataggaaaaggtgaacctaggagctatacatgcatcaaaagctacaactccaacaacaactgctacacaaagatggattcttgaaccagttggtta |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35840954 |
aagcacaggaaaaggtgaacctaggagctatacatgcatcaaaagctacaactccaacaacaactactacacaaagatggattcttgaaccagttggtta |
35840855 |
T |
|
| Q |
112 |
gttacactttcttcttcaatcatatctagaaattaaaagctacaagcaacaattgaaaacttgttaaaattaatatctacaattgcagactttaccattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35840854 |
gttacactttcttcttcaatcatatctagaaactaaaagctacaagcaacaattgaaaacttgttaaaattaatatctacaattgcagactttaccattt |
35840755 |
T |
|
| Q |
212 |
tccttatcttgattgagtagataaatgagctcaatccttcatgatattactacaaataggactccctcaatta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35840754 |
tccttatcttgattgagtagataaatgagctcaatccttcatgatattactacaaataagactccctcaatta |
35840682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 35897671 - 35897399
Alignment:
| Q |
12 |
aagcataggaaaaggtgaacctaggagctatacatgcatcaaaagctacaactccaacaacaactgctacacaaagatggattcttgaaccagttggtta |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35897671 |
aagcacaggaaaaggtgaacctaggagctatacatgcatcaaaagctacaactccaacaacaactactacacaaagatggattcttgaaccagttggtta |
35897572 |
T |
|
| Q |
112 |
gttacactttcttcttcaatcatatctagaaattaaaagctacaagcaacaattgaaaacttgttaaaattaatatctacaattgcagactttaccattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35897571 |
gttacactttcttcttcaatcatatctagaaactaaaagctacaagcaacaattgaaaacttgttaaaattaatatctacaattgcagactttaccattt |
35897472 |
T |
|
| Q |
212 |
tccttatcttgattgagtagataaatgagctcaatccttcatgatattactacaaataggactccctcaatta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35897471 |
tccttatcttgattgagtagataaatgagctcaatccttcatgatattactacaaataagactccctcaatta |
35897399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University