View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17594_high_14 (Length: 344)
Name: NF17594_high_14
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 48926213 - 48925883
Alignment:
| Q |
10 |
agcaccattactactgaggaggagacattcaaacacaacaacataatctcgccaaaagtttccaaggttcttgtgcaaacagatgcatccaataccggct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48926213 |
agcaccattactactgaggaggagacattcaaacacaacaacataatctcgccaaaagtttccaaggttcttgtgcaaacagatgcatccaataccggct |
48926114 |
T |
|
| Q |
110 |
tagtaagttctacaatttcaaatttaatcatacagatttgttgttttaatataatttttgga---atataataaagataatagtttttggctagtatata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48926113 |
tagtaagttctacaatttcaaatttaatcatacagatttgttgttttaatataatttttggaactatataataaagataatagtttttggctagtatata |
48926014 |
T |
|
| Q |
207 |
ctaactgagatgttgaatttg-tttttgggtattgaagtatgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctc |
305 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48926013 |
ctaactgagatgttgaatttgttttttgggtattgaagtatgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctc |
48925914 |
T |
|
| Q |
306 |
tcctagggcttacttcaagtgttcctttgct |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48925913 |
tcctagggcttacttcaagtgttcctttgct |
48925883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 3259090 - 3259014
Alignment:
| Q |
241 |
aagtatgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctctcctagggctta |
317 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
3259090 |
aagtatgtgatggatggatatcaatggaggaaatatggtcagaaggttactagagataacccctctcctagagctta |
3259014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 928320 - 928410
Alignment:
| Q |
246 |
tgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctctcctagggcttacttcaagtgttcctttgct |
336 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| || ||||| || ||||||||||| | ||| || ||||| ||||| || || |||||| |
|
|
| T |
928320 |
tgtgaaggatggataccattggaggaaatatggacaaaaagtgaccagagataacccttgtccaagagcttatttcaaatgctcttttgct |
928410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 45307632 - 45307722
Alignment:
| Q |
246 |
tgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctctcctagggcttacttcaagtgttcctttgct |
336 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || || || || || ||||| || ||||| || || |||||||| || || |||||| |
|
|
| T |
45307632 |
tgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgct |
45307722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University