View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_high_15 (Length: 340)
Name: NF17594_high_15
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 23965147 - 23965466
Alignment:
| Q |
18 |
ctaaaattgctctatgttgttcattatggttatgatattatgatttggtagcgttaacnnnnnnnnnnngtttt-----gttgtagaattcagatgagga |
112 |
Q |
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| T |
23965147 |
ctaaaattgctctatgttgttcattatggttatgatattatgatttggtcgcgttaacttttttttttttttttttcctgttgtagaattcacatgagga |
23965246 |
T |
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| Q |
113 |
tcagaagaatgaggatttgcatgaggatccgttgaatgaagattcatcggagcttctgcagagtgaggatgaggatatgttaagtgatgattcacatgag |
212 |
Q |
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| T |
23965247 |
tcagaagaatgaggatttgcatgaggatccgttgaatgaagattcatcggagcttcagcagagtgaggatgaggatatgttaagtgaagattcacatgag |
23965346 |
T |
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| Q |
213 |
gatgaaacggatgaggacgaggatgatgatcaatatgaggatcagttgagtgaagcttcaaatgaggtttcatctgagagtgagtggaatcaggatttgt |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23965347 |
gatgaagcggatgaggacgaggatgatgatcaatatgaggatcagttgagtgaagcttcaaatgaggtttcatctgagagtgagtggaatcaggatttgt |
23965446 |
T |
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| Q |
313 |
ctgaggatcataatgatgat |
332 |
Q |
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| T |
23965447 |
ctgaggatcataatgatgat |
23965466 |
T |
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