View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_high_25 (Length: 250)
Name: NF17594_high_25
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45391706 - 45391466
Alignment:
| Q |
1 |
atcttgagtttgaatctatattttatgagatcagaaataggcgtctcagttgaggacctgagataggtcagtgccacactaagaatatgttctactattt |
100 |
Q |
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| T |
45391706 |
atcttgagtttgaatctatattttatgagatcagaaataggcgtctcagttgaggacctgagataggtcagtgccacactaagaatatattctactattt |
45391607 |
T |
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| Q |
101 |
atggaagtcgatgagctacattctgactaccgcggcataacttaaaatctaatgccagcagttgctttggattgctatttgcagtgaggaactgataaac |
200 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391606 |
atgaaagtcgatgagctacattctgactaccacggcataacttaaaatctaatgccagcagttgctttggattgctatttgcagtgaggaactgataaat |
45391507 |
T |
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| Q |
201 |
tgcttgcttacagctcaacaaagaaaaccaccaagaataat |
241 |
Q |
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| T |
45391506 |
tgcttgcttacagctcaacaaagaaaaccaccaagaataat |
45391466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 45376421 - 45376320
Alignment:
| Q |
140 |
acttaaaatctaatgccagcagttgctttggattgctatttgcagtgaggaactgataaactgcttgcttacagctcaacaaagaaaaccaccaagaata |
239 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45376421 |
acttaaaatctaatgccagaggttgctttggattgctatttgcagtgaggaactgataaactgcttgcttacagctcaacaaagaaaaccacaaagaata |
45376322 |
T |
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| Q |
240 |
at |
241 |
Q |
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|| |
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| T |
45376321 |
at |
45376320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 45376891 - 45376745
Alignment:
| Q |
1 |
atcttgagtttgaatctatattttat----gagatcagaaataggcgtctcagttgaggacctgagataggtcagtgccacactaagaatatgttctact |
96 |
Q |
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||||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
45376891 |
atcttgagtttgaatctatatttaattttagagatcagaaatc--cgtctcagttgaggatctgagataggtcactgccacactaagaatatgttctact |
45376794 |
T |
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| Q |
97 |
atttatggaagtcgatgagctacattctgactaccgcggcataacttaaaat |
148 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
45376793 |
atttatggaagttgatgagctacattct---taccgcggcataacttaaaat |
45376745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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