View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_high_9 (Length: 397)
Name: NF17594_high_9
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 39864947 - 39864579
Alignment:
| Q |
19 |
gtggtgcctttatgcttcttaggttagctaatggtgtagcaaaggcctttgatatgagagaaactgctcctcttcatgcttccaaggtacctttcaatca |
118 |
Q |
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| T |
39864947 |
gtggtgcctttatgcttcttaggttagctaatggtgtagcaaagacctttgatatgagagaaactgctcctcttcatgcttccaaggtacctttcaatcg |
39864848 |
T |
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| Q |
119 |
tggactaaaattattcctttgcgtatagtttcgaagattttaattaaatagtggcggtggacgagaacgattatgtcatgatatctgatgcatcctcaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39864847 |
tggactaaaattattcctttgcgtatagtttcgaagattttaattaaatagtggtggtggacgagaacgattatgtcatgatatctgatgcatcctcaat |
39864748 |
T |
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| Q |
219 |
cgcggttgcgctgaccacgttgacatatcaaaacactttatgctgtagtccaagttgcacacttgcagacatttgtttggaaaaaccatgtggtgtagag |
318 |
Q |
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| T |
39864747 |
cgcggttgcgctgaccacgttgacatatcaaaacactttatgctgtagtccaagttgcacacttgcagacatttgtttggaaaaaccatgtggtgtagag |
39864648 |
T |
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| Q |
319 |
aaatgaaaaggacatgtagaggaaactagtaagaaaagtctagtagatggatgatataattgacctatg |
387 |
Q |
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| T |
39864647 |
aaatgaaaaggacatgtagaggaaactagtaagaaaagtctagtagatggatgatataattgacctatg |
39864579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 27116005 - 27115917
Alignment:
| Q |
19 |
gtggtgcctttatgcttcttaggttagctaatggtgtagcaaaggcctttgatatgagagaaactgctcctcttcatgcttccaaggta |
107 |
Q |
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| T |
27116005 |
gtggagcctttatgcttcttaggttagctaatggtgtagcaaaggcctttgatatgagagaaactgctcctcttcgtgcttctaaggta |
27115917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 36341714 - 36341355
Alignment:
| Q |
19 |
gtggtgcctttatgcttcttaggttagctaatggtgtagcaaaggcctttgatatgagagaaactgctcctcttcatgcttccaaggtacctttcaatca |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
36341714 |
gtggtgcctttatgcttcttaggttagctaattgtgtagcaaaggcttttgatatgagagaaactgctcctcttcttgcttccaaggtacctgtcaatca |
36341615 |
T |
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| Q |
119 |
tggactaaaattattcctttgcgtatagtttcgaagattttaattaaatagtggcggtggacgagaacgattatgtcatgatatctgatgcatcctcaat |
218 |
Q |
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| T |
36341614 |
tcgactataattattcctttgcatatagtttccaggattttaa----atagaggctgtggacaagagcgatcgtgtcatgatatctgatgtagcctcaat |
36341519 |
T |
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| Q |
219 |
cgcggttgcgctgaccacgttgacatatcaaaacactttatgctgtagtccaagttgcacacttgcagacatttgtttggaaaaaccatgtggtgtagag |
318 |
Q |
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|||||||| || ||| |||||||| |||||||||||||||| |||||||||| |||||||| | | ||||||||||||| ||||||||||||| ||||| |
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| T |
36341518 |
cgcggttgtgccaaccgcgttgacaaatcaaaacactttatgttgtagtccaaattgcacacgttccgacatttgtttggtaaaaccatgtggtatagag |
36341419 |
T |
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| Q |
319 |
aaatgaaaaggacatgtagaggaaactagtaagaaaagtctagtagatggatgatataattgac |
382 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
36341418 |
aaatgaaaaggacatgtagaggaaactagcaagaaaagtctagtaaatggatgatataattgac |
36341355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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