View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17594_low_10 (Length: 394)

Name: NF17594_low_10
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17594_low_10
NF17594_low_10
[»] chr8 (9 HSPs)
chr8 (120-376)||(25668786-25669042)
chr8 (120-309)||(25827214-25827401)
chr8 (304-376)||(25471672-25471745)
chr8 (120-200)||(25471480-25471562)
chr8 (305-376)||(25827438-25827510)
chr8 (16-44)||(25471357-25471385)
chr8 (269-309)||(25471596-25471636)
chr8 (16-44)||(25668669-25668697)
chr8 (16-44)||(25827090-25827118)
[»] chr3 (1 HSPs)
chr3 (151-188)||(42626166-42626203)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 120 - 376
Target Start/End: Original strand, 25668786 - 25669042
Alignment:
Q  120 tttaattgattcaattacttgatttcattatttgaaagaaagatgcgtatagcattttattaaaaataagagtataaatacnnnnnnnngaatatcaaaa 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||    
T  25668786 tttaattgattcaattacttgaattcattatttgaaagaaagatgcgtatagcatttcattaaaaataagagtataaatacagaaaaa-gaatatcaaaa 25668884  T
Q  220 caaattatgggactctcatgataatgaggtcaccctagcaagggcctgagcaactgcatttgtttgtcgtcaattaaactccacctgagatgatattgcc 319  Q
     |||| |||||| | |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  25668885 taaatgatgggattgtcatgataatgaggtcgccctagcaagggtctgagcaactgtatttgtttgtcgtcaattaaactccacttgagatgatattgcc 25668984  T
Q  320 aaactttgtagca-ttgcatgcctactataatactatggaaggcatctatcattttgg 376  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25668985 aaactttgtagcatttgcatgcctactataatactatggaaggcatctatcattttgg 25669042  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 120 - 309
Target Start/End: Original strand, 25827214 - 25827401
Alignment:
Q  120 tttaattgattcaattacttgatttcattatttgaaagaaagatgcgtatagcattttattaaaaataagagtataaatacnnnnnnnngaatatcaaaa 219  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||||||         ||||||||||    
T  25827214 tttaattgattcaattacttgatttaattatttgaaagaaagatgcttatagcatttcattaaaaataagaatataaatacaaaaaga--aatatcaaaa 25827311  T
Q  220 caaattatgggactctcatgataatgaggtcaccctagcaagggcctgagcaactgcatttgtttgtcgtcaattaaactccacctgaga 309  Q
     |||| |||||||| ||||||||||||| || ||||| ||||||||| ||||||| | |||||||||| || |||||||| |||||||||    
T  25827312 taaatgatgggactgtcatgataatgagatcgccctaacaagggcctaagcaactacgtttgtttgtcatctattaaacttcacctgaga 25827401  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 25471672 - 25471745
Alignment:
Q  304 ctgagatgatattgccaaactttgtagcat-tgcatgcctactataatactatggaaggcatctatcattttgg 376  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  25471672 ctgagatgatattgccaaacttcgtagcatctgcatgcctactatcatactatggaaggcatctaccattttgg 25471745  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 25471480 - 25471562
Alignment:
Q  120 tttaattgattcaattacttgatttcattatttgaaagaaagatgcgtatagcat---tttattaaaaataagagtataaatac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||   || |||||||||||||||||||||||    
T  25471480 tttaattgattcaattacttgatttaattatttgaaagaaa-atgcttatagcatttattaattaaaaataagagtataaatac 25471562  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 25827438 - 25827510
Alignment:
Q  305 tgagatgatattgccaaactttgtagcat-tgcatgcctactataatactatggaaggcatctatcattttgg 376  Q
    ||||||||||||||||||||   ||| |  |||||||||||||| ||| ||||||||||||||||||||||||    
T  25827438 tgagatgatattgccaaactccttagtacatgcatgcctactatcatattatggaaggcatctatcattttgg 25827510  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 25471357 - 25471385
Alignment:
Q  16 aatataatagatttgattgattatttagt 44  Q
    |||||||||||||||||||||||||||||    
T  25471357 aatataatagatttgattgattatttagt 25471385  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 25471596 - 25471636
Alignment:
Q  269 gcaactgcatttgtttgtcgtcaattaaactccacctgaga 309  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  25471596 gcaactacatttgtttgttgtctattaaactccacctgaga 25471636  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 25668669 - 25668697
Alignment:
Q  16 aatataatagatttgattgattatttagt 44  Q
    |||||||||||||||||||||||||||||    
T  25668669 aatataatagatttgattgattatttagt 25668697  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 25827090 - 25827118
Alignment:
Q  16 aatataatagatttgattgattatttagt 44  Q
    |||||||||||||||||||||||||||||    
T  25827090 aatataatagatttgattgattatttagt 25827118  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 42626203 - 42626166
Alignment:
Q  151 ttgaaagaaagatgcgtatagcattttattaaaaataa 188  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  42626203 ttgaaagaaagatgcttatagcattttattaataataa 42626166  T

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