View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17594_low_11 (Length: 391)
Name: NF17594_low_11
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 8744797 - 8744440
Alignment:
| Q |
19 |
gtgttcatatactctccataatataaagtacttaatgcaaaattaccactccattctaaccaaccagatggatgaatcaaactatcaagagaagtcttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8744797 |
gtgttcatatactctccataatataaagtacttaatgcaaaattaccactccattctaaccaaccagatggatgaatcaaactatcaagagaagtcttca |
8744698 |
T |
|
| Q |
119 |
taaaaactgccctagaatattgcttccatggtcttccaagataagtcttaacagaattttggaccggtttcaaatccgaagcagcggtaaccctagaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8744697 |
taaaaactgccctagaatattgcttccatggtcttccaagataagtcttaacagaattttggaccggtttcaaatccgaagcagcggtgaccctagaatt |
8744598 |
T |
|
| Q |
219 |
gtgaatagaaatgccagtgttttggttaggatctgttctaccttgtgcagtgattgtgttaactttgtttggagggtttcttggaaatatgttacaattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8744597 |
gtgaatagaaatgccagtgttttggttaggatctgttctaccttgtgcagtgattgtgttaactttgtttggagggtttcttggaaatatgttacaattt |
8744498 |
T |
|
| Q |
319 |
tggaacactgcagcagcgttaccaaagatgaaatcaactgtgccgtaaatgttacatt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8744497 |
tggaacactgcagcagcgttaccaaagatgaaatcaactgtaccgtaaatgttacatt |
8744440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 376
Target Start/End: Complemental strand, 8767133 - 8767049
Alignment:
| Q |
292 |
gggtttcttggaaatatgttacaattttggaacactgcagcagcgttaccaaagatgaaatcaactgtgccgtaaatgttacatt |
376 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||| | || ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
8767133 |
gggtttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatgttacatt |
8767049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 44474148 - 44474223
Alignment:
| Q |
26 |
tatactctccataatataaagtacttaatgcaaaattaccactccattctaaccaaccagatggatgaatcaaact |
101 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
44474148 |
tatactctgcataatataatgtgcttaatgcaaaatccccactccattcacgccaaccagaaggatttatcaaact |
44474223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 44463786 - 44463820
Alignment:
| Q |
240 |
ttggttaggatctgttctaccttgtgcagtgattg |
274 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
44463786 |
ttggttaggatctgttcttccttgtgcagtgattg |
44463820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 8380727 - 8380780
Alignment:
| Q |
306 |
tatgttacaattttggaacactgcagcagcgttaccaaagatgaaatcaactgt |
359 |
Q |
| |
|
||||| ||||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
8380727 |
tatgtcacaattttggaacacaacagctgaattaccaaagatgaaatcaactgt |
8380780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University