View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_13 (Length: 344)
Name: NF17594_low_13
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 19855845 - 19856154
Alignment:
| Q |
20 |
tacccttttcccaaacaaagcaaagaaaccaaaccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagcttag |
119 |
Q |
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| T |
19855845 |
tacccttttgccaaacaaagcaaataaaccaaaccccacatgatccatgatcaactttctcacaaaagtttggcaaattcaaacactaacattagcttag |
19855944 |
T |
|
| Q |
120 |
ccctaggtccttggaattggaacaaccttgcacacaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19855945 |
ccctaggtccttggaattggaacaaccttgcacacaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcac |
19856044 |
T |
|
| Q |
220 |
atggaacccatttgaagttgtgaagtaactgagccaaccaaagatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaa |
319 |
Q |
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||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856045 |
atgaaacccatttgaagttgtgaagcaactgagcaaaccaaagatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaa |
19856144 |
T |
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| Q |
320 |
tggtgctaac |
329 |
Q |
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|||||||||| |
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| T |
19856145 |
tggtgctaac |
19856154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 53 - 329
Target Start/End: Original strand, 32830085 - 32830350
Alignment:
| Q |
53 |
ccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagcttagccctaggtccttggaattggaacaaccttgcac |
152 |
Q |
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| T |
32830085 |
ccccacaagatccataaccaaatttcttacgaaagtcaagcaaattcaaacactaacattagc-----cctaggtcctagcaa------caaccttgcac |
32830173 |
T |
|
| Q |
153 |
acaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagttgtgaagtaactgag |
252 |
Q |
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| T |
32830174 |
agaagtggtttcttcatctccacagaaagcataagacattcatccaaatcaacaggtgaatcatcaaatggaacccatttgaagttgtgaagtaactgag |
32830273 |
T |
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| Q |
253 |
ccaaccaaagatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaac |
329 |
Q |
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| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32830274 |
caagccaaagatgaacaaaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaac |
32830350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 177 - 321
Target Start/End: Complemental strand, 35081224 - 35081080
Alignment:
| Q |
177 |
gaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagttgtgaagtaactgagccaaccaaagatgaacagaagcca |
276 |
Q |
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|||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
35081224 |
gaaagcataagacattaatccaaatcaataggtgaatcatcacatggaacccatttgaagttgtgaagtaactgagcaagccaaagatgaacagaagcca |
35081125 |
T |
|
| Q |
277 |
aacccatagcttttccaggacaaaccctcctaccagctccaaatg |
321 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35081124 |
aatccatagcttttccaggacaaaccctcctaccagctccaaatg |
35081080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 39427803 - 39427879
Alignment:
| Q |
140 |
aacaaccttgcacacaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcat |
216 |
Q |
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|
|||||||||||||||||| |||| |||||||||| | ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
39427803 |
aacaaccttgcacacaagcagtttcttcatctccacataaagcataagatattcatccaaatcaacaggtgaatcat |
39427879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 35081319 - 35081257
Alignment:
| Q |
53 |
ccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagc |
115 |
Q |
| |
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||||||||||| ||| ||||| ||||| || ||||| |||||||||||||||||||||||| |
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| T |
35081319 |
ccccacaagattcataaccaaatttcttacgaaagtcaagcaaattcaaacactaacattagc |
35081257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 321
Target Start/End: Complemental strand, 8748767 - 8748491
Alignment:
| Q |
53 |
ccccacaagatccatgaccaactttctcacaaaagtttggcaaattcaaacactaacattagcttagccctaggtccttggaattggaacaaccttgcac |
152 |
Q |
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||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||| |||||||||| | || ||||||||||| |
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| T |
8748767 |
ccccacaagatccataaccaaatttcttacgaaagtcaagcaaattcaaacactaacattagc-----cctaggtcctagcaa------caaccttgcac |
8748679 |
T |
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| Q |
153 |
acaagtggttttttcatctccatagaaagcttaagacattcatccaaatcaacaagtgaatcatcacatggaacccatttgaagtt-------------- |
238 |
Q |
| |
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||||||||||| |||||||||| ||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
8748678 |
acaagtggtttcttcatctccacagaaagcataagacattaatccaaatcaataggtgaatcatcacatggaacccatttgaagttatggaacccatttg |
8748579 |
T |
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| Q |
239 |
-----gtgaagtaactgagccaaccaaagatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatg |
321 |
Q |
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||||||||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8748578 |
aagttgtgaagtaactaagcaagccaaagatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg |
8748491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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