View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_17 (Length: 321)
Name: NF17594_low_17
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 250249 - 250525
Alignment:
| Q |
21 |
caatttataaattcacttttctttcagaagtcatctcatgaaagaaaaaaccatcggactcatagggaagaaaccaaagatattaataattaggtcataa |
120 |
Q |
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| T |
250249 |
caatttataaattcacttttctttcagaagtcatctcatgaaagaaaaaaccatcggactcatagggaagaaaccaaagatattaataattaggtcataa |
250348 |
T |
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| Q |
121 |
aaaagatattgaaatccataaaataaattttcaaagacaagacaagtgttgatgagaaaattggagaaagaaagttggagcaagcatggaagnnnnnnnn |
220 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
250349 |
aaaagatattaaaatccataaaataaattttcaaagacaagacaagtgttgatgagaaaa-tggagaaagaaagttggagcaagcatggaagaaaaaaaa |
250447 |
T |
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| Q |
221 |
gatgatgagtgtgtgataaataagtttgtggtgggttgtttaatttgttataggaagaacaaaagaacaaatgatgaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250448 |
gatgatgagtgtgtgataaataagtttgtggtgggttgtttaatttgttataggaagaacaaaagaacaaatgatgaa |
250525 |
T |
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