View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_2 (Length: 1130)
Name: NF17594_low_2
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 4715767 - 4716363
Alignment:
| Q |
20 |
ttacttttgactgaacttttgattaattactagagtcaccttttcctaaaaatcagagtattaacaacaaaaactcttatctatatacgacnnnnnnnnn |
119 |
Q |
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| T |
4715767 |
ttacttttgactgaacttttgattaattactagagtcaccttttcctaaaaatcagagtattaacaacaaaaactcttatccatatacgacttctttttt |
4715866 |
T |
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| Q |
120 |
--cctacttaattttgagtaatatgaattccaacctacccttaaaaagaaaagatcaaaagatgaagaattccaactagctaattaacgtacgtttaaaa |
217 |
Q |
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| T |
4715867 |
ttcctacttaattttgagtaatatgaattccaacctacccttaaaaagaaaagatcaaaagatgaagaattccaactagctaattaacgtacgtttaaaa |
4715966 |
T |
|
| Q |
218 |
gttaataatttcttatcacgtattcaaatttttatatacatgtattaaacactaaatccaatatttagcactaaatattcgattggatcaaaagtatgtc |
317 |
Q |
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| T |
4715967 |
gttaataatttcttatcacgtgttcaaatttttatatacatgtattgaacactaaatccaatatttagcactaaatattcgattggatcaaaagtatgtc |
4716066 |
T |
|
| Q |
318 |
tctagatataattaaccttttcaattcaacgtatctaagctcacaatcgagttgacttttcaattgagcatttatattaccaacttgcatgattagtatt |
417 |
Q |
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| T |
4716067 |
tctagatataattaaccttttcaattcaacgtctctaagctcacaatcgagttgtcttttcaattgagcatttatattaccaacttgcatgattagtatt |
4716166 |
T |
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| Q |
418 |
tgtgaggctcttgctagctactttaacaaaactgatccaacatatttataagattaaatttgttttatatgctgattctgattttctattctctcacgtt |
517 |
Q |
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| T |
4716167 |
tgtgaggctcttgctagctactttaacaaaactgatccaacatatttataagattaaatttgttttatatgctgattctgattttctattctctcacgtt |
4716266 |
T |
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| Q |
518 |
atctttaaactgcaattaatgattaggcattgctttgggcataaaatataagtaaacccggcctggaagtaattaacaagccggaat-tgaggtgtt |
613 |
Q |
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| T |
4716267 |
atctttaaactgcaattaatgattaggcattgctttgagcataaaatttaagtaaacccggcctggaagtaattaacaagccgtaatatgaggtgtt |
4716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 702 - 1115
Target Start/End: Original strand, 35918695 - 35919100
Alignment:
| Q |
702 |
ctcatgggtaaggctactaaatccctaactttaggcctatctacnnnnnnntacttttcattaaaaagatctcttaacaaaaaaggtcatattaaatctt |
801 |
Q |
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| T |
35918695 |
ctcatgggtaaggctactaaatccctaactttaggcctacctacaaaaaaatacttttcattaaaaagatctcttaacaaaaaaggtcatattaaatctt |
35918794 |
T |
|
| Q |
802 |
gctttaaacctcgcaaaattattgaggcggacatgtcgagcgtgttaaaggctaaatgacgatcataaaccagaaaattgcggttttcaaaatcatttac |
901 |
Q |
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| T |
35918795 |
gctttaaacctcgcaaaattattgagccggacatgtcgagcgtgttaaaggctaaaggacgatcataaaccagaaaattgtggttttcaaaatcatttac |
35918894 |
T |
|
| Q |
902 |
agagtgnnnnnnntggtgcaatttatggaaagtcgtgatcttagattcaaaatcaggcgatggaaatatcaagtttcaatggagnnnnnnntgagaacag |
1001 |
Q |
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| T |
35918895 |
agagtgaaaaaaatggtgcaatttatggaaagtcgtgatcttagattcaaaatcaggcgattgaaatatcaagtttcaa------------tgacaacag |
35918982 |
T |
|
| Q |
1002 |
aaaccaaatcacaacaatgaataatagtaatt----atgaatgacattattacatttttatggtaaagaaaagaaacgtaaccttttgattttgatttgc |
1097 |
Q |
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| T |
35918983 |
agaccaaatcacaagaatgaataatagtaattatgaatgaatgacattattacatttttatggtaaagaaaagaaacgtaaccttttgattttgatttgc |
35919082 |
T |
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| Q |
1098 |
agtcgaagggtttatgtt |
1115 |
Q |
| |
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||| |||||||||||||| |
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| T |
35919083 |
agtagaagggtttatgtt |
35919100 |
T |
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