View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_21 (Length: 286)
Name: NF17594_low_21
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 7281857 - 7281617
Alignment:
| Q |
25 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaaagattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
124 |
Q |
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| T |
7281857 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaa-gattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
7281759 |
T |
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| Q |
125 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataatagttcaagctaaataattataagttatagataaaaatatttt-caaataaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7281758 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataatacttcaagctaaataattataagttatagataaaaatattttacaaataaa |
7281659 |
T |
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| Q |
224 |
caagtttcaagttaaattcagtaaagttgcctccttggttct |
265 |
Q |
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| T |
7281658 |
caagtttcaagttaaattcagtaaagttgcctccttggttct |
7281617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 7284752 - 7284604
Alignment:
| Q |
25 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaaagattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7284752 |
attgcacctcattttgatccaagctgcaatagtgactttagtaaaa-gattagtcttatgggtaaacaatagtgacttgagataacatttaattttaacc |
7284654 |
T |
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| Q |
125 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataata |
174 |
Q |
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| T |
7284653 |
attgtgaattgttgtcttccaaagtagaaacatcaaatgattgtataata |
7284604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 40234360 - 40234396
Alignment:
| Q |
203 |
ataaaaatatttt-caaataaacaagtttcaagttaa |
238 |
Q |
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| T |
40234360 |
ataaaaatattttacaaataaacaagtttcaagttaa |
40234396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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