View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_23 (Length: 267)
Name: NF17594_low_23
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 22138483 - 22138701
Alignment:
| Q |
10 |
attatactgcaacttgttcagaaaaaacactgtactttaattagataagcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagt |
109 |
Q |
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| T |
22138483 |
attatactgcaacttgttcagaaaaaacactgtactttaattagataagcactggagtgaattatagtgcaacttgttcatcactatgatcagtagcagt |
22138582 |
T |
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| Q |
110 |
tgttattaatttcaccaataaacaccacttaccgaaacacgatatccttgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataat |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138583 |
tgttattaatttcaccaataaacaccacttaccgtaacacgatatccttgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataat |
22138682 |
T |
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| Q |
210 |
gttgtcaacaatagtgtct |
228 |
Q |
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||| ||||||||||||||| |
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| T |
22138683 |
gttatcaacaatagtgtct |
22138701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 18942005 - 18941800
Alignment:
| Q |
23 |
ttgttcagaaaaaacactgtactttaattagataagcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagttgttattaatttc |
122 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18942005 |
ttgtccagaaaaaacactgtactttaattagataagcactggagtgaattatactgcaacttgttcatcactatgatcagtagcagttgttattaatttc |
18941906 |
T |
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| Q |
123 |
accaataaacaccacttaccgaaacacgatatccttgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataatgttgtcaacaata |
222 |
Q |
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| T |
18941905 |
accaataaacaccacttaccgtaacacgatatccttgaagcaataaattgctgcatatgcctactaatatttcttggcaagaataatgttgtcaacaata |
18941806 |
T |
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| Q |
223 |
gtgtct |
228 |
Q |
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|||||| |
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| T |
18941805 |
gtgtct |
18941800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 21964615 - 21964785
Alignment:
| Q |
58 |
gcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagttgttattaatttcaccaataaacaccacttaccgaaacacgatatcct |
157 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
21964615 |
gcactggagtgaattatactgcaacttgttcatcactatgatcagtagcagttgttattaatttcaccaataatcaccacttaccgtaacacgatatcct |
21964714 |
T |
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| Q |
158 |
tgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataatgttgtcaacaatagtgtct |
228 |
Q |
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| T |
21964715 |
tgaagcaataaattgctgcatatgcctactaatatttcttggcaagaataatgttgtcaacaatagtgtct |
21964785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 21987051 - 21987221
Alignment:
| Q |
58 |
gcactggagtgaattatagtgcaacttgttcatcactatgatcggtagcagttgttattaatttcaccaataaacaccacttaccgaaacacgatatcct |
157 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
21987051 |
gcactggagtgaattatactgcaacttgttcatcactatgatcagtagcagttgttattaatttcaccaataatcaccacttaccgtaacacgatatcct |
21987150 |
T |
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| Q |
158 |
tgaagcaataaattgctgcatatgcctactaatatatcttggcaagaataatgttgtcaacaatagtgtct |
228 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21987151 |
tgaagcaataaattgctgcatatgcctactaatatttcttggcaagaataatgttgtcaacaatagtgtct |
21987221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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