View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_26 (Length: 248)
Name: NF17594_low_26
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 39864366 - 39864460
Alignment:
| Q |
12 |
atgaagagaaattaagggcctgtttccttctggtgtttcctgttttcatttccattgataaacaaatagtagagaacaaataatggaaagttttg |
106 |
Q |
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| T |
39864366 |
atgaagagaaattaagggcctgtttccttctggtgtttcctgttttcatttccattgataaacaaatagtagagaacaaataatggaaagttttg |
39864460 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 39864517 - 39864602
Alignment:
| Q |
163 |
cattgttttcagtaattctggaaatttattctctatcacaatcaaaaagaaaaattcctaaccataggtcaattatatcatccatc |
248 |
Q |
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| T |
39864517 |
cattgttttcagtagttctggaaatttattctctatcacaattaaaaagaaaaattcctaaccataggtcaattatatcatccatc |
39864602 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 36341317 - 36341372
Alignment:
| Q |
192 |
tctctatcacaatcaaaaagaaaaattcctaaccataggtcaattatatcatccat |
247 |
Q |
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| T |
36341317 |
tctctatcacaattaaaaagaaaaattcctaaccaaatgtcaattatatcatccat |
36341372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 36341117 - 36341210
Alignment:
| Q |
12 |
atgaagagaaattaagggcctgtttccttctggtgtttcctgttttcatttccattgataaacaaatagtagagaacaaataatggaaagttttg |
106 |
Q |
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| T |
36341117 |
atgaagagaaat-aagggtctttttacttcttgtgtttcctgttttcatttccattggtatataaatattagagaatacataatgtaaggttttg |
36341210 |
T |
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