View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_29 (Length: 237)
Name: NF17594_low_29
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 43725747 - 43725543
Alignment:
| Q |
14 |
attattctagtggttcgaatctttatgtttgtannnnnnnagaaggacttgggtgaagttcccctaaggtcctaattcaactatattaatctaaataatt |
113 |
Q |
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| T |
43725747 |
attattctagtggttcgaatctttatgtttgtatttttttagaaggacttgggtgaagttcccctaaggtcctaattcaactatattaatctaaataatt |
43725648 |
T |
|
| Q |
114 |
tgatgaaaagtcctaattcctagatgtgatgggagaattannnnnnnattaggaattatg-tgccctaaactggaaaggcctatgaaaagatgattccac |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43725647 |
tgataaaaagtcctaattcctagatgtgatgggagaattatttttttattaggaattatgctgccctaaactggaaaggcctatgaaaagatgattccac |
43725548 |
T |
|
| Q |
213 |
atacg |
217 |
Q |
| |
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||||| |
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| T |
43725547 |
atacg |
43725543 |
T |
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