View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17594_low_31 (Length: 236)
Name: NF17594_low_31
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_31 |
 | |
|
| [»] scaffold1211 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26377230 - 26377005
Alignment:
| Q |
1 |
gtacaattgacaaccaatcattttgttcttgtgcattcatttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26377230 |
gtacagttgacaaccaatcattttgttcttgtgcattcatttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataa |
26377131 |
T |
|
| Q |
101 |
gttgaacgaactttcgagtacaatacaacccataagcatatgctgcacctttcatagttgcttaactataccacagcaaattgggac--agtgtccatat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26377130 |
gttgaacgaactttcgagtacaatacaacccataagcatatgctgcacctttcatagttgcttaactataccacagcaaattgggacatagtgtccatat |
26377031 |
T |
|
| Q |
199 |
ttgtaggttttctactttataatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26377030 |
ttgtaggttttctactttataatatt |
26377005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 1152 - 965
Alignment:
| Q |
39 |
atttatctacattctttcaagtcggattttctattctaacatctagtctctacaatcaataagttgaacgaactttcgagtacaatacaacccataagca |
138 |
Q |
| |
|
||||||| ||| ||||| |||| ||||| ||| ||||| ||||||||||||| ||||||||||| || ||||||| | |||||||||| || |||||| |
|
|
| T |
1152 |
atttatcaacagtctttgcagtcagatttgctagtctaaaatctagtctctaccatcaataagtttaagaaactttcaaatacaatacaaaccgtaagca |
1053 |
T |
|
| Q |
139 |
tatgctgcacctttcatagttgcttaactataccacagcaaattgggac---agtgtccatatttgtaggttttctactttataatatt |
224 |
Q |
| |
|
|||| | ||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1052 |
tatgtggaacctttcatggttgcataactatactgcagc-cattgggacataagtgtccatatttgtaggtattcaactttataatatt |
965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University