View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17594_low_32 (Length: 235)
Name: NF17594_low_32
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32825538 - 32825754
Alignment:
| Q |
1 |
acatatactacattttgtccattattcttgtgtacatgacacaattcttgagcatatctttcgtggaactgcctttgagaatgtgtatatagaggtatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32825538 |
acatatactacattttgtccattattcttgtgtacatgacacaattcttgagcatatctttcgtggaactgcctttgagaatgtgtatatagagatatat |
32825637 |
T |
|
| Q |
101 |
atagaatacattttagcagcaacacatacttacttgttaaacaaagaccctcttgattttgatatctttatgaattctctaggaagtaaatctaaattgg |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32825638 |
atagaatacattttagcagcaacccatacttacttgttaaacaaagaccctcttgattttgatatctttatgaattctctaggaagtgaatctaaattgg |
32825737 |
T |
|
| Q |
201 |
cttcccatagtctttac |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32825738 |
cttcccatagtctttac |
32825754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University