View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17594_low_34 (Length: 205)

Name: NF17594_low_34
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17594_low_34
NF17594_low_34
[»] chr2 (1 HSPs)
chr2 (20-186)||(26377210-26377376)
[»] chr3 (1 HSPs)
chr3 (134-186)||(50063925-50063977)
[»] chr1 (1 HSPs)
chr1 (134-186)||(33966650-33966702)
[»] chr6 (2 HSPs)
chr6 (134-186)||(25101067-25101119)
chr6 (134-171)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (142-186)||(43281164-43281208)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 26377210 - 26377376
Alignment:
Q  20 atgattggttgtcaattgtacacgtctcagacgacacatgggctatagtagnnnnnnnnaatgcaattcttagactagagtaaaaagatttgttttgggt 119  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  26377210 atgattggttgtcaactgtacacgtctctgacgacacatgggctatagtagttttttttaatgcaattcttagactagagtaaaaagatttgttttgggt 26377309  T
Q  120 ttctaatagtaggaaggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctc 186  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  26377310 ttctaatagtaggaaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctc 26377376  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 50063925 - 50063977
Alignment:
Q  134 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctc 186  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  50063925 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctc 50063977  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 33966650 - 33966702
Alignment:
Q  134 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctc 186  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  33966650 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctc 33966702  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 25101119 - 25101067
Alignment:
Q  134 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctc 186  Q
    ||||||| |||||||||||||||||||||||||||||  | ||||||||||||    
T  25101119 aggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctc 25101067  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 23890038 - 23890001
Alignment:
Q  134 aggatcgtgtgctggctcgtaggatcttacgattctac 171  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  23890038 aggatcgagtgctggctcgtaggatcgtacgattctac 23890001  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 43281208 - 43281164
Alignment:
Q  142 gtgctggctcgtaggatcttacgattctacatgccacggcacctc 186  Q
    ||||||| || ||||||| ||||||||||||| ||||||||||||    
T  43281208 gtgctggttcataggatcgtacgattctacatcccacggcacctc 43281164  T

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