View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_4 (Length: 581)
Name: NF17594_low_4
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 563
Target Start/End: Original strand, 21383994 - 21384547
Alignment:
| Q |
13 |
agatgaaggagttaaagaggacccttatattcaaaagtttacgatgaagatgtgcagtcaaatcatttgattttttaaaatgaaactggtt-taacctat |
111 |
Q |
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| T |
21383994 |
agatgagggagttaaagaggacccttatatccaaaagtttacgatgaagatatgcagtcaaatcatttgattttttagaatgaaactggttataacctat |
21384093 |
T |
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| Q |
112 |
aatcgggaggtaaataatgtctaatcaataattatttttgtcagagttcaaacttcagaaactctattcgaaatttaattaatca----cttgatatact |
207 |
Q |
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| T |
21384094 |
aatcaggaggtaaataacgtctaatcaataattgtttccgtcagagttcaaactttagaaactctattcaaaatttgattaatcaatcacttgatatact |
21384193 |
T |
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| Q |
208 |
ccattcacttgattaaattggtcaatttgttttaattagtaaaaaataattaagaaaataa-gatattttgtggaagaaaataatctagtttatattaca |
306 |
Q |
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| T |
21384194 |
c-attcacttgattaaattggtcaatttgttttaagtagtaaaatataattaagaaaataaagatattttgtggaagaaaataatctagtttatattaca |
21384292 |
T |
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| Q |
307 |
tgcacatatattgacagatcattataatataaaccattacatctcacttgaacttttaaagtagggtttcacatcaaaggagnnnnnnnncaccaaatcc |
406 |
Q |
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| T |
21384293 |
tggacatatattgacagatcattataatataaaccattacatctgacttgaacttttaaagtaggtttcaacatcaaaggag-aaaaaaacaccaaatcc |
21384391 |
T |
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| Q |
407 |
tatctaggagtttcaacggtgtaaaactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaac-aaataaagtgggg |
505 |
Q |
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| T |
21384392 |
tatctaggagtttcaacggtgtaaaactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaacaaaataaagtgggg |
21384491 |
T |
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| Q |
506 |
catataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagc |
563 |
Q |
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| T |
21384492 |
c--ataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagc |
21384547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 465 - 563
Target Start/End: Complemental strand, 21373108 - 21373010
Alignment:
| Q |
465 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagc |
563 |
Q |
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| T |
21373108 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagc |
21373010 |
T |
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