View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_5 (Length: 552)
Name: NF17594_low_5
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 133 - 552
Target Start/End: Complemental strand, 35918657 - 35918238
Alignment:
| Q |
133 |
acataaaacatgttaacattactaaatttgaaatttactactattacattggtccgagtggaaaattaggcttggatcctctaagcaaagtttgaacttt |
232 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| |
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| T |
35918657 |
acataaaacatgttaacattactaaatttgaaatgtactactattacattggtccgagtgaaaaattaggcttggatcctttaagcaaagtttgagcttt |
35918558 |
T |
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| Q |
233 |
ttggatgaaaaaatgtggttgggaggggagatcccacgatgggtggccagccagattcctcgctagagagtactcagcaaagttggttgatatttcgcat |
332 |
Q |
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| T |
35918557 |
ttggatgaaaaaatgtggttgggaggggagatcccacgatgggtggccagccagattcctcgctagagagtactcagcaaagttggttgatatttcgcat |
35918458 |
T |
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| Q |
333 |
caataacattgttaacnnnnnnnnnnntactaaatttcaaatttaagggttttgtgacaaactcattttttagtagtcacttttccctaaaaagtgaaca |
432 |
Q |
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| T |
35918457 |
caataacattgttaacaaaaaaaaaaatactaaatttcaaatttaagggttttgtgacaaactcattttttagtagtcacttttccctaaaaagtgaaca |
35918358 |
T |
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| Q |
433 |
tgtttcaaacgtgtgtcaaattcaatgtgtcatttacattgtctagagtttataaattttagtggaactcattctttgtaactgtcaataactgctgatc |
532 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35918357 |
tgtttcaaacctgtgtcaaattcaatgtgtcatttacattgtctagagtttataaattttagtggaactcattctttgtaactgtcaataactgctgatc |
35918258 |
T |
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| Q |
533 |
aaagctatattaccttttgt |
552 |
Q |
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| T |
35918257 |
aaagctatattaccttttgt |
35918238 |
T |
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Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 4716518 - 4716429
Alignment:
| Q |
13 |
gagatgaagcaattccctataaattctctctcatattcctaaacaaaaggcctctcatattgtatctgataaaatatattgtccatcttg |
102 |
Q |
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| T |
4716518 |
gagatgaagcaattccctataaattatctctcagattcctaaacaaaaggcctctcatattgtatctgataaaatatattgtccatcttg |
4716429 |
T |
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