View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_6 (Length: 522)
Name: NF17594_low_6
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 2494007 - 2493679
Alignment:
| Q |
16 |
cagagccaatcaatatccagatcaacagatggtcaatcaacagggctgagcactacaaacacaataacagatcctaacatatttcaaaaataacaaaagc |
115 |
Q |
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| T |
2494007 |
cagagccaatcaatatccagatcgacagatggtcaatcaacagggctgagcactacaaacacaataacagaccctaacatatttcaaaaataacgaaagc |
2493908 |
T |
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| Q |
116 |
aacccagaaccaataaaaacccgatcgagagatgatcaatcaataaacctgagtaccacgagtacataaccaaattagcaccaatcgaagcccaaatcga |
215 |
Q |
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| T |
2493907 |
aacccagaaccaataaaaacccgatcgagagatgatcaatcaataaacctgagtaccacgagtacataaccaaattagcaccaatcgaagcccaaatcga |
2493808 |
T |
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| Q |
216 |
ttggtgctagcaccaaactagcatcaaccaaatagtgagggcttacacaaaaacctaaaatggacaatgcctcttgatagatccttttgcgtttatctta |
315 |
Q |
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| T |
2493807 |
ttggtgctagcaccaaactagcatcaaccaaatagtgagggcttacacaaaaacctaaaatggacaatgcctcttgatagatccttttgcgtttatctta |
2493708 |
T |
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| Q |
316 |
atggttacgtttgttacaattccaagtca |
344 |
Q |
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| T |
2493707 |
atggttacgtttgttacaattccaagtca |
2493679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 389 - 505
Target Start/End: Complemental strand, 2493634 - 2493518
Alignment:
| Q |
389 |
ggtcaaatatttctatcttaagttgaatgattaattcttttttggtacatagcaaaatattgtatttcatataaaaatgatttgatataaaataccatcg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2493634 |
ggtcaaatatttctatcttaagttgaatgattaattcttttttggtacatagcaaaatattgtatttcatataaaaatgatttgatataaaataccatcg |
2493535 |
T |
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| Q |
489 |
ttattttcagctgtttt |
505 |
Q |
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| T |
2493534 |
ttattttcagctgtttt |
2493518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 344
Target Start/End: Complemental strand, 2490647 - 2490613
Alignment:
| Q |
310 |
atcttaatggttacgtttgttacaattccaagtca |
344 |
Q |
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| T |
2490647 |
atcttaatggttacgtttgttaaaattccaagtca |
2490613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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