View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_7 (Length: 420)
Name: NF17594_low_7
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 44116583 - 44116177
Alignment:
| Q |
1 |
cgaagatggtagttctttgggtaacccaggcatgtcaggctttggaggcattcttaggaactctagtgaatgtctgcttaatttctttggccggtgtggc |
100 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
44116583 |
cgaagatggtagttctttgggtaacccgggcatgtaaggctttggaggcattcttaggaactctagtgaatgtatgcttagtttctttggccggtgtggc |
44116484 |
T |
|
| Q |
101 |
tataaaattaacgctaatgctgagttgatgaccattgcacatgggttcaatacggtctggaatgcaggattcaaaattggatttttgagtcagactccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44116483 |
tataaaattaacgctaatgctgagttgatgaccattgcacgtgggctcaatacggtctggaatgcaggattcaaaactggatttttgagtcagactccca |
44116384 |
T |
|
| Q |
201 |
aaccgctccgcagctcatcaatgaggatgtccttgagacccatccttatgccactatgctgaaacatatcaagaaatttttgtcctttgattggtgtgag |
300 |
Q |
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|| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
44116383 |
aatcgctccgcagctcgtcaatgatgatgtccttgagacccatcattatgccactatgctgaaacatatcaaggaatttatgtcctttgattggtgtgag |
44116284 |
T |
|
| Q |
301 |
cttcaatcatacggtgcgagagggtaattgttgtgttgataggctagccaagtaaggggctgctcataataatggagtcactacccaactcagatttccc |
400 |
Q |
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||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44116283 |
cttcactcatacggtgtgagagggtaattgctgtgttgataggctggccaagtaaggggctgctcataataatggagtcactacccaactcagatttccc |
44116184 |
T |
|
| Q |
401 |
cacctct |
407 |
Q |
| |
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||||||| |
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| T |
44116183 |
cacctct |
44116177 |
T |
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