View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17594_low_8 (Length: 408)
Name: NF17594_low_8
Description: NF17594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17594_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 28006296 - 28005928
Alignment:
| Q |
18 |
attgtcagtgtcagcacataaagggtagccagtaaatatatggccttgaacttttgtggcttccacatcgcatgcattatttccctgtaccaaccaa--- |
114 |
Q |
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| T |
28006296 |
attgtcagtgtcagcacataaagggtagccagtaaatatatggccttgaacttttgtggcttccacatcgcatgcattatttccctgtaccaaccaacca |
28006197 |
T |
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| Q |
115 |
-tacatttatttatcatcatctcattattaatttatttaatttcttcatttgggcaataactcttatacaaccatgtatgttttcccttaaaatccaaaa |
213 |
Q |
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| T |
28006196 |
atacatttatttatcatcatctcattattaatttatttaatttcttcatttgggcaataactcttatacaaccatgtatgttttgccttaaaatccaaaa |
28006097 |
T |
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| Q |
214 |
aggcactttaacatatcaaatgtctctattgtataactaattatcaaccaagtgaccttagctttaatttggacaaaaattgttttaattttaatctttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28006096 |
aggcactttaacatatcaaatgtctctattgtataactaattatcaacca---------------aatttggacaaaaattgttttaattttaatctttt |
28006012 |
T |
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| Q |
314 |
aataaagcaatatctggaacaaaggagctgatgaaaataccatttttggggtctaaaattatagcacaagagaatgtgaatatt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28006011 |
aataaagcaatatctggaacaaaggagctgatgaaaataccatttttgggctctaaaattatagcacaagagaatgtgaatatt |
28005928 |
T |
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