View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17595_high_5 (Length: 235)
Name: NF17595_high_5
Description: NF17595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17595_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36015122 - 36014903
Alignment:
| Q |
1 |
acaagaatatatcagacgagttacagatgctaagggagaatcccaaaaacatgtaatgtatctaaatgtcaccttggttcgtctatactctctgtctgca |
100 |
Q |
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| T |
36015122 |
acaagaatatatcagacgagttacagatgctaagggagaatccgaaaaacatataatgtatctaaatgtcaccttggttcgtctatactctctgtctgca |
36015023 |
T |
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| Q |
101 |
caaatttttgcgttctcaatataactcttaacagattctttcaactcttcaatttacaaatattctggatgaagcaattggttctgatgagagtgtttga |
200 |
Q |
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| T |
36015022 |
caaatttttacattctcaatataactc-taacagattctttcaactcttcaatttacaaatattctggatgaagcaactggttctgatgagagtgtttga |
36014924 |
T |
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| Q |
201 |
accatcaacaacagaaaaaga |
221 |
Q |
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| T |
36014923 |
accatcaacaacagaaaaaga |
36014903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 36012961 - 36012907
Alignment:
| Q |
157 |
caaatattctggatgaagcaattggttctgatgagagtgtttgaaccatcaacaa |
211 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
36012961 |
caaatattctggatgaagcaactagttctgataagagtgtttgaaccatcaacaa |
36012907 |
T |
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