View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17595_low_1 (Length: 628)
Name: NF17595_low_1
Description: NF17595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17595_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 468 - 604
Target Start/End: Original strand, 21150249 - 21150385
Alignment:
| Q |
468 |
tgcctgttattttgcatgatgctctttggacttataggactacctataagacaccacttggtatgtctccatatatttttgtttatggaaatgtttataa |
567 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
21150249 |
tgcctgttattttgcatgatgctctttggccttataggactgcctataagacaccacttggtatgtctccatatattttggtttatggaaatgtttatca |
21150348 |
T |
|
| Q |
568 |
ttttcctattgaattagaatacaagatcaagtgggct |
604 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
21150349 |
tttttctattgaattaaaatacaaggccaagtgggct |
21150385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 604
Target Start/End: Original strand, 21157462 - 21157526
Alignment:
| Q |
540 |
atatttttgtttatggaaatgtttataattttcctattgaattagaatacaagatcaagtgggct |
604 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
21157462 |
atattttggtttatggaaatgtttatcatttttctattgaattagaatacaaggccaagtgggct |
21157526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 452 - 601
Target Start/End: Original strand, 36394666 - 36394814
Alignment:
| Q |
452 |
ccttcaagaaaaaatttgcctgttattttgcatgatgctctttggacttataggactacctataagacaccacttggtatgtctccatatatttttgttt |
551 |
Q |
| |
|
|||||||||||||||| | || || ||||| |||||| || ||| |||||||| || ||||||||||||||||||| |||||||||| | || |||| |
|
|
| T |
36394666 |
ccttcaagaaaaaattggtctattcttttggatgatgttccatgggcttatagggctgcctataagacaccacttgg-atgtctccatgttagttagttt |
36394764 |
T |
|
| Q |
552 |
atggaaatgtttataattttcctattgaattagaatacaagatcaagtgg |
601 |
Q |
| |
|
||||||| || | |||| ||| ||||||||||||||||| ||| |||| |
|
|
| T |
36394765 |
atggaaaaacttgtcatttgcctgttgaattagaatacaaggtcatgtgg |
36394814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 556
Target Start/End: Original strand, 18770625 - 18770704
Alignment:
| Q |
477 |
ttttgcatgatgctctttggacttataggactacctataagacaccacttggtatgtctccatatatttttgtttatgga |
556 |
Q |
| |
|
||||| |||||||||| ||| |||||| || | |||||||||||||||||||| |||| | ||||| || ||||||||| |
|
|
| T |
18770625 |
ttttggatgatgctctatgggcttatatgattgcctataagacaccacttggtctgtcccaatataagttggtttatgga |
18770704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University