View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17595_low_2 (Length: 482)

Name: NF17595_low_2
Description: NF17595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17595_low_2
NF17595_low_2
[»] chr8 (2 HSPs)
chr8 (36-463)||(25104497-25104922)
chr8 (195-233)||(20658600-20658638)
[»] chr2 (4 HSPs)
chr2 (122-216)||(30538304-30538391)
chr2 (165-206)||(6117721-6117762)
chr2 (152-201)||(32104079-32104128)
chr2 (194-231)||(43586084-43586121)
[»] chr6 (2 HSPs)
chr6 (152-198)||(10031563-10031611)
chr6 (152-199)||(19369809-19369858)
[»] chr5 (5 HSPs)
chr5 (163-201)||(309148-309186)
chr5 (152-201)||(15302515-15302564)
chr5 (168-201)||(19167613-19167646)
chr5 (119-152)||(32979596-32979629)
chr5 (163-211)||(9031956-9032004)
[»] scaffold0015 (1 HSPs)
scaffold0015 (196-233)||(73263-73300)
[»] scaffold0504 (1 HSPs)
scaffold0504 (194-230)||(8793-8829)
[»] scaffold0122 (1 HSPs)
scaffold0122 (163-199)||(10328-10364)


Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 36 - 463
Target Start/End: Original strand, 25104497 - 25104922
Alignment:
Q  36 aaaatactggataacaacttgctttgtgccaccgacactgctaatagaaggtgtaacactgtgtcttacacgtgcctggacacacactgacacgacatcg 135  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25104497 aaaatactggataacaacttgctttgtgccaccgacacttctaatagaaggtgtaacactgtgtcttacacgtgcctggacacacactgacacgacatcg 25104596  T
Q  136 acacatgtgattacatttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctggtgtccgtgtatgtgtctgtgcttcatagataac 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  25104597 acacatgtgattacatttacattgaattgtcattttgtcaaaattttatcggtgtcaa--tgtctggtgtccgtgtatgtgtctgtgcttcatagataac 25104694  T
Q  236 tggtaatctgtgttgacgaacaaacaagccagattacaagaaaaagaaaataaaatgggatagaacaatgtctaacagccctgtacaaatagctcccttc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25104695 tggtaatctgtgttgacgaacaaacaagccagattacaagaaaaagaaaataaaatgggatagaacaatgtctaacagccctgtacaaatagctcccttc 25104794  T
Q  336 accagagaagcattatctgcgacctcactatctcactaaaacagaaatcccagatagtttctctcgtcccccatttattccttatataactaactcatca 435  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25104795 accggagaagcattatctgcgacctcactatctcactaaaacagaaatcccagatagtttttctcgtcccccatttattccttatataactaactcatca 25104894  T
Q  436 ttacttgtcagtcactcatttccatcct 463  Q
    |||||| |||||||||||||||||||||    
T  25104895 ttacttatcagtcactcatttccatcct 25104922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 20658600 - 20658638
Alignment:
Q  195 gtgtctggtgtccgtgtatgtgtctgtgcttcatagata 233  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  20658600 gtgtctggtgtccgtgtccgtgtctgtgcttcatagata 20658638  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 30538391 - 30538304
Alignment:
Q  122 ctgacacgacatcgacacatgtgattacatttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctggtgtccgtgtatgtg 216  Q
    |||||||||||| |||||||||||||||||| |      ||||||||||| |||||||| |||| |||||||| ||| |||||||||||| ||||    
T  30538391 ctgacacgacattgacacatgtgattacattaa------attgtcattttttcaaaattgtatctgtgtcaacttgt-tggtgtccgtgtctgtg 30538304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 6117721 - 6117762
Alignment:
Q  165 tcattttgtcaaaattttatcggtgtcaacgtgtctggtgtc 206  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||    
T  6117721 tcattttatcaaaatattatcggtgtcaacgtgtcaggtgtc 6117762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 32104079 - 32104128
Alignment:
Q  152 ttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctg 201  Q
    |||||||||||||||||||| ||||| | ||| || ||||||||||||||    
T  32104079 ttacattgaattgtcattttttcaaattattagcgctgtcaacgtgtctg 32104128  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 43586084 - 43586121
Alignment:
Q  194 cgtgtctggtgtccgtgtatgtgtctgtgcttcataga 231  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  43586084 cgtgtccggtgtccatgtatgtgtctgtgcttcataga 43586121  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 10031611 - 10031563
Alignment:
Q  152 ttacattgaatt--gtcattttgtcaaaattttatcggtgtcaacgtgt 198  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  10031611 ttacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgt 10031563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 19369858 - 19369809
Alignment:
Q  152 ttacattgaatt--gtcattttgtcaaaattttatcggtgtcaacgtgtc 199  Q
    ||||||||||||  |||||||| ||||||||||||| |||||||||||||    
T  19369858 ttacattgaattatgtcattttctcaaaattttatccgtgtcaacgtgtc 19369809  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 309186 - 309148
Alignment:
Q  163 tgtcattttgtcaaaattttatcggtgtcaacgtgtctg 201  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  309186 tgtcattttctcaaaattttatcggtgtcgacgtgtctg 309148  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 15302564 - 15302515
Alignment:
Q  152 ttacattgaattgtcattttgtcaaaattttatcggtgtcaacgtgtctg 201  Q
    |||| ||||||||||||||| |||||||||||||| |||| | |||||||    
T  15302564 ttaccttgaattgtcattttttcaaaattttatcgttgtcgatgtgtctg 15302515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 19167613 - 19167646
Alignment:
Q  168 ttttgtcaaaattttatcggtgtcaacgtgtctg 201  Q
    |||| |||||||||||||||||||||||||||||    
T  19167613 ttttttcaaaattttatcggtgtcaacgtgtctg 19167646  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 32979596 - 32979629
Alignment:
Q  119 acactgacacgacatcgacacatgtgattacatt 152  Q
    |||||||||||||||| |||||||||||||||||    
T  32979596 acactgacacgacatcaacacatgtgattacatt 32979629  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 9031956 - 9032004
Alignment:
Q  163 tgtcattttgtcaaaattttatcggtgtcaacgtgtctggtgtccgtgt 211  Q
    ||||||||  |||||| ||||||||||||| ||| ||||||||||||||    
T  9031956 tgtcatttcctcaaaaatttatcggtgtcaccgtatctggtgtccgtgt 9032004  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 73300 - 73263
Alignment:
Q  196 tgtctggtgtccgtgtatgtgtctgtgcttcatagata 233  Q
    |||||||||||||||  |||||||||||||||||||||    
T  73300 tgtctggtgtccgtgactgtgtctgtgcttcatagata 73263  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 8793 - 8829
Alignment:
Q  194 cgtgtctggtgtccgtgtatgtgtctgtgcttcatag 230  Q
    |||||| |||||||||||||||||| |||||||||||    
T  8793 cgtgtccggtgtccgtgtatgtgtccgtgcttcatag 8829  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 10328 - 10364
Alignment:
Q  163 tgtcattttgtcaaaattttatcggtgtcaacgtgtc 199  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  10328 tgtcattttgtcaaaattttatctgtgtcaatgtgtc 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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